View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_high_6 (Length: 334)
Name: NF16213_high_6
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 5663085 - 5663378
Alignment:
| Q |
19 |
gtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagta |
118 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5663085 |
gtaattgtattagcaagattgaattcattgtttatggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagaa |
5663184 |
T |
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| Q |
119 |
gttaaag--acattagcttcacgttctcctccatttcctgtca-atttggtactcacgagccagtagttatgttctgctgccttgggttataacttcttc |
215 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5663185 |
gttaaagacacattagcttcacattctcctccatttcctgtcagttttggtactcacgagccagtagttatgttctgctgccttggtttataacttcttc |
5663284 |
T |
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| Q |
216 |
atcttcctcctgttattatactactgttgttataatagttttcttctatgctgatattgctaacatgttactataaactgcttatgagaatcatgtg |
312 |
Q |
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| T |
5663285 |
atct---ttctgttattatactactgttgttataatagttttcttctgtgctgatattgctaacatgttactataatctgcttatgagaatcatgtg |
5663378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 52131324 - 52131504
Alignment:
| Q |
19 |
gtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagta |
118 |
Q |
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| T |
52131324 |
gtaattgtattagcaagattgaatttattattgacggtgtatctcaatccgatttcgaagcttctgtcatcggtaagaccatggtcgcttctcacaagaa |
52131423 |
T |
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| Q |
119 |
gttaaaga-cat-tagcttcacgttctcctccatttcctgtcaatttggtactcacgagccagtagttatgttctgctgccttgg |
201 |
Q |
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| T |
52131424 |
gtcaaagaacatgtagcgtcacgttatcctccatttcctgtcaatttggtactcacgaga----agttatgttctgctgccttgg |
52131504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 11649249 - 11649155
Alignment:
| Q |
19 |
gtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcac |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11649249 |
gtaattgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcatcggtaagaccatggtcgcttctcac |
11649155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 22007734 - 22007884
Alignment:
| Q |
24 |
tgtattagcaagattgaattcattgttgacggtgtatctcgctccgacttcgaagcttctgtcaccggtaagaccatggtcgcttctcacaagtagttaa |
123 |
Q |
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||||||| |||| |||||||||||||| |||||||||||||| ||||||| || ||||||||| || |||||||||||||||| ||||||| |||||| |
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| T |
22007734 |
tgtattacgaagactgaattcattgttggcggtgtatctcgcttcgacttcaaaacttctgtcatcgtcaagaccatggtcgcttttcacaagaagttaa |
22007833 |
T |
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| Q |
124 |
ag-acat-tagcttcacg----ttctcctccatttcctgtcaatttggtac |
168 |
Q |
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| T |
22007834 |
agaacatgtagcttcacgttgattctcctccatttcctgtcaatttggtac |
22007884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 11649159 - 11649126
Alignment:
| Q |
168 |
ctcacgagccagtagttatgttctgctgccttgg |
201 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
11649159 |
ctcacgagccagcagttatgttctgctgccttgg |
11649126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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