View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_high_8 (Length: 242)
Name: NF16213_high_8
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38898982 - 38899202
Alignment:
| Q |
1 |
ctgaagtaattgtgaggaactagagatggctctagctatgaagggtnnnnnnngtccatgttgagatgcaaaagctatcttacaaacccagtttactaca |
100 |
Q |
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| T |
38898982 |
ctgaagtaattgtgaggaactagagatggctctagctatgaagggtaaaaaaagtccatgttgagatgcaaaagctatcttacaaacccagtttactaca |
38899081 |
T |
|
| Q |
101 |
atggttgcatatatgcagagtcatttggaagnnnnnnnagtagtaatctagaaacatggttgccaaggacttaaaataaaccacatacttgttctcatgc |
200 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38899082 |
atggttgcatatatgcagagtcattgggaagtttttttagtagtaatctagaaacatggttgccaaggacttaaaataaaccacatacttgttctcatgc |
38899181 |
T |
|
| Q |
201 |
caacacttccaccaactagat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38899182 |
caacacttccaccaactagat |
38899202 |
T |
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