View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_low_1 (Length: 833)
Name: NF16213_low_1
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_low_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 19 - 833
Target Start/End: Original strand, 49870559 - 49871372
Alignment:
| Q |
19 |
ccattgcatagggaattccagattcggtaatccaatcatcacgagcagttgcgttagcaatttcgtaaaactttcctggatagtacttagcagcttcacc |
118 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49870559 |
ccattgcatagggaattccagattcagtaatccaatcatcacgagcagttgcgttagcaatttcgtaaaactttcctggatagtatttagcagcttcacc |
49870658 |
T |
|
| Q |
119 |
ggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870659 |
ggcagagatggttttaacacctggccatttcactctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaa |
49870758 |
T |
|
| Q |
219 |
agatttcccatccatggcatataaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttccca |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870759 |
agatttcccatccatggcatgtaaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttccca |
49870858 |
T |
|
| Q |
319 |
aataagctatcttgggttgcatggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870859 |
aataagctatcttgggttgcatggtaagaacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcc |
49870958 |
T |
|
| Q |
419 |
tcctgctgtcaccatgcattgttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgatt |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49870959 |
tcctgctgtcaccatgcattgttgagttgccattggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgatt |
49871058 |
T |
|
| Q |
519 |
gttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgt |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49871059 |
gttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgt |
49871158 |
T |
|
| Q |
619 |
ctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgt |
718 |
Q |
| |
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| T |
49871159 |
ctgctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgt |
49871258 |
T |
|
| Q |
719 |
caaattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaaacattgcattagtaacttactgaatgttgcggtattgtaa |
818 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49871259 |
c-aattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaatcattgcattagtaacttactgaatgttgcggtattgtaa |
49871357 |
T |
|
| Q |
819 |
gtctgcacaccatca |
833 |
Q |
| |
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||||||||||||||| |
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| T |
49871358 |
gtctgcacaccatca |
49871372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 21 - 833
Target Start/End: Original strand, 49864624 - 49865441
Alignment:
| Q |
21 |
attgcatagggaattccagattcggtaatccaatcatcacgagcagttgcgttagcaatttcgtaaaactttcctggatagtacttagcagcttcaccgg |
120 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
49864624 |
attgaataaggaattccagattcggtaatccaatcatcacgagcagttccgttagcaatttcgtaaaactttcctggatagtatttagcagcttcaccgg |
49864723 |
T |
|
| Q |
121 |
cagagatggttttaacacctggccatttcactctaagattagtggcagcaccatcacccttgttgttgtattccaaataagtgcatgtctccttgaaaag |
220 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49864724 |
cagagatggttttaacacctggccatttcactctaagattagtggcagcaccagcacccttgttgttgtattccaaataagtgcatgtctccttgaaaag |
49864823 |
T |
|
| Q |
221 |
atttcccatccatggcatataaccctctggtacaaagagaccatcaatgagagaatccacgataacaaccttggagaagtttctccatggtcttcccaaa |
320 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49864824 |
atttcccatccatggcatataaccctctggtacaaagaggccatcaatgagagaatccacgataacaaccttggagaaatttctccatggtcttcccaaa |
49864923 |
T |
|
| Q |
321 |
taagctatcttgggttgcatggtaagtacttcgggttccccggtgaaatggcagttttggaaaacaagggcggatacactgtcaactttggttcttcctc |
420 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49864924 |
taagctatcttgggttgcatggtaagaacttcgggttccccggtgaaatgacagttttggaaaacaagggcggatacactgtcaactttggttcttcctc |
49865023 |
T |
|
| Q |
421 |
ctgctgtcaccatgcattgttgagttgccattggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgt |
520 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
49865024 |
ctgctgtcaccatgcattgttgatttgccattggttttctaacgacgagcttgcagttttggaaaactccaacagcatcaccaaagacaaagtcaattgt |
49865123 |
T |
|
| Q |
521 |
tccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtct |
620 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
49865124 |
tccgctaatagtgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtct |
49865223 |
T |
|
| Q |
621 |
gctgttacacggagggccactgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtca |
720 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| | |
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| T |
49865224 |
gctgttacacggagggccactgcttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctg-cc |
49865322 |
T |
|
| Q |
721 |
aattaataacaaatcgatcattacaacttacaacttaggaacagatgctaaatattaaacattgcat----------tagtaacttactgaatgttgcgg |
810 |
Q |
| |
|
|||||||||||| |||| ||||||||||| || | |||| | |||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
49865323 |
aattaataacaacccgatatacacaacttacaa-ttttttagagatcc---atattaaacattgcattaaaattgagtagtaacttaccgaatgttgcgg |
49865418 |
T |
|
| Q |
811 |
tattgtaagtctgcacaccatca |
833 |
Q |
| |
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||||||||||||||||||||||| |
|
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| T |
49865419 |
tattgtaagtctgcacaccatca |
49865441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 471 - 648
Target Start/End: Complemental strand, 13967668 - 13967491
Alignment:
| Q |
471 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgtcttttggattgtgtgtaga |
570 |
Q |
| |
|
||||| |||||||||||||||| || || ||||| |||||||||||||| || | |||| |||||| ||||||||||| | || |||||| ||||| |
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|
| T |
13967668 |
ttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattggacgtaga |
13967569 |
T |
|
| Q |
571 |
gtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgat |
648 |
Q |
| |
|
|||| |||||| |||||| ||||| ||||||| ||| | ||||| ||||||||||| |||||||| |||||||||| |
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| T |
13967568 |
gtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 452 - 649
Target Start/End: Complemental strand, 13960523 - 13960326
Alignment:
| Q |
452 |
tggttttctaacgacgagcttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
551 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||| ||| || ||||| ||| | ||||||||| || | ||| ||||||| ||||||||||| |
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| T |
13960523 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
13960424 |
T |
|
| Q |
552 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
649 |
Q |
| |
|
| || ||||| | | ||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
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| T |
13960423 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 37150693 - 37150614
Alignment:
| Q |
471 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
550 |
Q |
| |
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|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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|
| T |
37150693 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37150614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 550
Target Start/End: Complemental strand, 37159518 - 37159439
Alignment:
| Q |
471 |
ttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattg |
550 |
Q |
| |
|
|||||||||||||| ||| |||||| ||||||||||||||||| || || | |||||||||||| ||||||||||| |
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| T |
37159518 |
ttgcagttttggaatactgattctgcattgccaaagacaaagtcgatggtacctgaaatggtgcagtcacggtagaattg |
37159439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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