View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_low_3 (Length: 573)
Name: NF16213_low_3
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 39 - 556
Target Start/End: Original strand, 50465207 - 50465724
Alignment:
| Q |
39 |
ctaggctctgtatttattaagaacttctttttattgtttttacctcatatactatatatccctgtcacattcaataaataacccgtcatttggatagagg |
138 |
Q |
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| T |
50465207 |
ctaggctctgtatttattaggaacttctttttattgtttttacctcatatactatatatccctgtcacattcaataaataacccgtcatttggatagagg |
50465306 |
T |
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| Q |
139 |
gagagataccatatgatatttctgcttttcacccaataatttatatgtaaaga-nnnnnnnnnacggttaattaacccattaaatcattaatcacattta |
237 |
Q |
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| T |
50465307 |
gagagataccatatgatatttctgcttttcacccaataatttatatgtaaagattttttttttacggttaattaacccgttaaatcattaatcacattta |
50465406 |
T |
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| Q |
238 |
actttaatcataattacttctaaaagtcacatgtatgattagttgtgacaatgtaaaaaccgtctcacgcaatatgaaatatacacttagaataaaggaa |
337 |
Q |
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| T |
50465407 |
actttaatattaattacttctaaaaatcacgtgtatgattagttgtgataatgtaaaaaccgtctcacgcaatatgagatatac------aataaaggaa |
50465500 |
T |
|
| Q |
338 |
agaaagtgatataagaagnnnnnnnntaatagatttgatgtagcaaaacagagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgt |
437 |
Q |
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| T |
50465501 |
agaaagtgatataagaag--aaaaaataatagatttgatgtagcaaaatagagaggagaaaatggggtaagaaaatcaagattacaattgaaaatgttgt |
50465598 |
T |
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| Q |
438 |
atagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaaaaagaat-------tagtaatacacagttgcatatccattcttttatgtac |
530 |
Q |
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| T |
50465599 |
atagagttagtacttgatcgtgctagttgacttgtttgtgaatggctaaaaagaattagtaagtagtaatacacagttgcatatccattcttttatgtac |
50465698 |
T |
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| Q |
531 |
atgcataatgcattacattctgtgat |
556 |
Q |
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| T |
50465699 |
atgcataatgcattacattctgtgat |
50465724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 277
Target Start/End: Original strand, 26491773 - 26491837
Alignment:
| Q |
211 |
aacccattaaatcattaatcacatttaactttaatcataattacttctaaaagtcacatgtatgatt |
277 |
Q |
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| T |
26491773 |
aaccctttaaattattaatcacatttaaattttatcataatcacttctcaa--tcacatgtatgatt |
26491837 |
T |
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