View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_low_5 (Length: 457)
Name: NF16213_low_5
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 441
Target Start/End: Original strand, 26073928 - 26074366
Alignment:
| Q |
12 |
agagagagggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatc |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26073928 |
agagagagggaacttacaaacgaccatgagccctgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatc |
26074027 |
T |
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| Q |
112 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagacc |
211 |
Q |
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| T |
26074028 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacctttacacttagacc |
26074127 |
T |
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| Q |
212 |
ttgctaataataataacaacaac---------gataatagtaatagacatcagacaacaattatcgtatcagacatcaaacacgtttttatatgaagtgt |
302 |
Q |
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| T |
26074128 |
ttgctaataataataataacaacaacaataataataatagtaatatacatcagacaacaattatcgtatcaaacatcaaacacgttttcatatgaagtgt |
26074227 |
T |
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| Q |
303 |
cggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaattcaagttaattttcattttttaactgatttgttagttga |
402 |
Q |
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| T |
26074228 |
cggtgttacatggttaatcaggtagccataatttttctttggaaggaaaagtctttttaattcaagttaatttttattttttaactgatttgttagttga |
26074327 |
T |
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| Q |
403 |
tgaaattacataccccaatactgtattggtgattaacaa |
441 |
Q |
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| T |
26074328 |
tgaaaatacataccccaatactgtattggtgattaacaa |
26074366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 26093601 - 26093786
Alignment:
| Q |
12 |
agagagagggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatc |
111 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26093601 |
agagagagggaacttacaaacgaccatgagccctgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatattaatatc |
26093700 |
T |
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| Q |
112 |
tcccacttttccttcaaaatgcacctataaataccaaactcaaccatattagttagttaatatcagaattttcctttgacaaaacc |
197 |
Q |
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| T |
26093701 |
gcccacttttccttcaaaatgcacctatagataccaaactcaacaatattagttagttgatatcagaattttcctttgacaaaacc |
26093786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 264 - 441
Target Start/End: Original strand, 26093831 - 26094007
Alignment:
| Q |
264 |
tatcgtatcagacatcaaacacgtttttatatgaagtgtcggtgttacatggttaatcaggtagccataatttttctttggagggaaaagtcttttcaat |
363 |
Q |
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||||| || |||||||||||| |||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| || ||||||||||||||||| |
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| T |
26093831 |
tatcgcattagacatcaaacatgtttttatataaagtgtcggtgttacatagttaatcagataagcacaatttttctttagaaggaaaagtcttttcaat |
26093930 |
T |
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| Q |
364 |
tcaagttaattttcattttttaactgatttgttagttgatgaaattacataccccaatactgtattggtgattaacaa |
441 |
Q |
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| T |
26093931 |
tcaagttaattttta-tttttaactgatttgttagttgatgaaaatacataccccaatactgtattggtggttaacaa |
26094007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 26105015 - 26105163
Alignment:
| Q |
18 |
agggaacttacaaacgaccatgagccatgtgctctgcaggtgcatgccaatgaagttgtttcaatgaataattcattccatttatagtaatatctcccac |
117 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
26105015 |
aggggacttacaaacgaccatgagccctgtgctctgcaggtgcatgccagtgaagttgtctcaatgaataattcattccatttatgttaatatctcccac |
26105114 |
T |
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| Q |
118 |
ttttccttcaaaatgcacctata-aataccaaactcaaccatattagtt |
165 |
Q |
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||| ||||||||||| ||||||| || ||||||||||||||| |||| |
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| T |
26105115 |
tttaccttcaaaatgtacctatattttaacaaactcaaccatatcagtt |
26105163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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