View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16213_low_8 (Length: 287)
Name: NF16213_low_8
Description: NF16213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16213_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 25 - 287
Target Start/End: Complemental strand, 526361 - 526099
Alignment:
| Q |
25 |
tgaaacagtgaaagggttgtcattattatgattatatataacctgtgaagaagcacacaaacaatacacgatatggacaccgacacgccaatatcaataa |
124 |
Q |
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| T |
526361 |
tgaaacagtgaaagggttgtcattattatgattatatataacctgtgaagaagcacacaaacaatacacaatatggacaccaacacgccaatatcaataa |
526262 |
T |
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| Q |
125 |
aattttgtgactcttgttagacactggaacacacattcgataagaagttttgatgttattgagatcctaacactatttcagaaaatgacatattcataca |
224 |
Q |
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| T |
526261 |
aattttgtgacacttgtcagacactggaacacacattcgataagaagttttgatgttattgagatcctaacactatttcagaaaatgacatattcataca |
526162 |
T |
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| Q |
225 |
aaatggtaccttattataagagaaagattgatcatggtggaagcagcagagagacgttgcgat |
287 |
Q |
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| T |
526161 |
aaatggtaccttattataagagaaagattgatcatggtggaagcagcagagagacgttgcgat |
526099 |
T |
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