View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16214_high_1 (Length: 736)
Name: NF16214_high_1
Description: NF16214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16214_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 11 - 736
Target Start/End: Original strand, 15832002 - 15832708
Alignment:
| Q |
11 |
cacctcaatatttaatggtctataaacagttttttacgaagttgattgcaaatatgaataacaatgtaaatattctataccttaagagaccaatatttta |
110 |
Q |
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| T |
15832002 |
cacctcaatatttaatggtctataaacaattttttacgaagttgattgaaaatatgagtaacagtgtaaatattctataccttaaaagaccaatatttta |
15832101 |
T |
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| Q |
111 |
acaaataaaacataaaaaatcaagttgtaaccnnnnnnntcttaaaagattaacttgatataaacatcaaagaacaaggtggtacttaggctttatttta |
210 |
Q |
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| T |
15832102 |
acaaataaaacataaaaaatcaatttgtaaccaaaaaa-tcttaaaagattaacttgttataaacatcaaacaacaaggtggtactttggctttatttta |
15832200 |
T |
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| Q |
211 |
ataataaggtgtaggtgaaaacaatagtactcttgaagtttttgatagtgtatgtagtgatcatccaattatccaataacatatcatatcttttattaat |
310 |
Q |
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| T |
15832201 |
ataataaggtgtaggtgaaaacaatagtactcttgaagtttt-gatagtgtatgtagtagtgatc-----atccaataacatatcatatcttttattaat |
15832294 |
T |
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| Q |
311 |
ttatttaaatataaaattaaagttggaatgagttttgcctttagtacccccaatcatacttaaggtacctaaaaatttaacctcaaatttatttccgagt |
410 |
Q |
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| T |
15832295 |
ttatttaaatataaaattaaagttggaatgagttttgcctttagtactcccaatcatacttaaggtacctaaaaatttaacctcaaatttatttccgagt |
15832394 |
T |
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| Q |
411 |
ctttagagtgctataaaatagccaatttgttatgtgactccttgtacaacatgttttccgaatctaaaacaaactctcctaacaaactatgtttactttt |
510 |
Q |
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| T |
15832395 |
ctttagagtgctataaaatagccaatttgttatgtgactccttgtacaacatgttttccgaatctaaaacaaactctcctaacaaactatgtttactttt |
15832494 |
T |
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| Q |
511 |
gaatagttcaacatttccaacaattaaagtagaaacacacaaacaaaaggacttgtttcatttcatgaatgaatataacaatagaaaaaaggcataggga |
610 |
Q |
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| T |
15832495 |
gaatagttcaacatttccaacaattaaagtagaaacacacaaacaaaaggacttgtttcatttcatgaatgaatataacaatagaaaaaaggcataggga |
15832594 |
T |
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| Q |
611 |
tatgatgcaattacatgcaatggaaacaagatctgcaaaacgtnnnnnnntagctcaaatagaacaagaacaagaaaacaatgccaaatcaaaaccatta |
710 |
Q |
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| T |
15832595 |
tatgatgcaattacatgcaatggaaacaagatctgcaaaacgtaaaa---------aaatagaacaagaacaagaaaacaatgccaaatcaaaacc---a |
15832682 |
T |
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| Q |
711 |
ttaatagatcgaattagtgatctccc |
736 |
Q |
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| T |
15832683 |
ttaatagatcgaattagtgatctccc |
15832708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 15831915 - 15831970
Alignment:
| Q |
11 |
cacctcaatatttaatggtctataaacagttttttacgaagttgattgcaaatatga |
67 |
Q |
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| T |
15831915 |
cacctcaatattaaatggtctataaacag-tttttatgaagttgattgaaaatatga |
15831970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 31065260 - 31065340
Alignment:
| Q |
24 |
aatggtctataaacagttttttacgaagttgattgcaaatatgaataacaatgtaaatattctataccttaagagaccaat |
104 |
Q |
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| T |
31065260 |
aatggtctataagcactttttaacgaagttggctgaaaaaatggatgacaatgtaaatattctataatttaaaagaccaat |
31065340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 36268081 - 36268147
Alignment:
| Q |
15 |
tcaatatttaatggtctataaacagttttttacgaagttgattgcaaatatgaataacaatgtaaat |
81 |
Q |
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| T |
36268081 |
tcaatattaaatggtcaataagcacttttttatgaagttgattgaaaaaatggataacagtgtaaat |
36268147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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