View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16214_high_2 (Length: 545)
Name: NF16214_high_2
Description: NF16214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16214_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 160 - 533
Target Start/End: Complemental strand, 33903018 - 33902649
Alignment:
| Q |
160 |
ttaaatatggagaagtagagagtctatgtttaaatctcatccctgcatattattgttcttccagctactaactgagttgtatttatagaacgcaacatcc |
259 |
Q |
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| T |
33903018 |
ttaaatatgaagaagtaaagagtctatgtttaaatctcaactttgcatatcattgttcttgcagctactaactgagttgtacttatagaacgcaacattc |
33902919 |
T |
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| Q |
260 |
atctttattgtcctttctaaaaatatt-ataatactcttaactatttattatttaaaccaatttatttatctctttgcaataaattaccaaggataaatt |
358 |
Q |
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| T |
33902918 |
atcttttttgtcctttctaaaaatatttataatactcttaactatttattatttaaaccaatttatttatctctttgcaataaattaccaaagataaatt |
33902819 |
T |
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| Q |
359 |
aacaaaacaataattaacgttacattgaactttatgaacgataagtaaataagaataattattttagcaaatgcgacaattaaaaaagacagaatatata |
458 |
Q |
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| T |
33902818 |
aacaaaacaataattaacgttacattgaactttatgaacgataagtaaataagaataattattttagcaaatgcgacaattaaaaaagacggaatatata |
33902719 |
T |
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| Q |
459 |
ttctttatggaaacacttagtttttgcatattagaaaggtaacactccaccctcttgtgataattgttagcaaga |
533 |
Q |
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| T |
33902718 |
ttc-----gaaaacacttagtttttgcatattagaaaggcaacgctccaccctcttgtgataattgttagcaaga |
33902649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33903208 - 33903044
Alignment:
| Q |
1 |
gcgttgtcaatcaaatttatataattgattgctgtcatccctcacgctaatcaattaactatagcggtttaatcataccttcatagtcaagtcaaaagta |
100 |
Q |
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| T |
33903208 |
gcgttgtcaatcaaatttatataattgattgctgtcatccctcacgctaatcaattaactacagcggtttaatcacaccttcatagtcaagtcaaaagta |
33903109 |
T |
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| Q |
101 |
aaaagaatggagggagtaatcaaagaaagtgtccaaataatgcagcatccatttttatgttaaata |
166 |
Q |
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| T |
33903108 |
aaaagaatgg-gggagtaatcaaagaaagtgtccaaataatgcagcatccatttttatgttaaata |
33903044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 387
Target Start/End: Original strand, 51584415 - 51584474
Alignment:
| Q |
329 |
ctctttgcaataaattaccaaggataa-attaacaaaacaataattaacgttacattgaa |
387 |
Q |
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| T |
51584415 |
ctctttgcaataaatcactgaggataatattgacaaaacaataattaatgttacattgaa |
51584474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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