View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16214_high_4 (Length: 395)
Name: NF16214_high_4
Description: NF16214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16214_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 28 - 386
Target Start/End: Original strand, 43003346 - 43003707
Alignment:
| Q |
28 |
catagtcgacgtctatttccatccacaatcctccgttcaataaacaacatttgctgacaattattttgacagtttgcgagaaaacaccactaatgacaac |
127 |
Q |
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| T |
43003346 |
catagtcgacgtctatttccatccacaatcctccgttcaataaacaacatttgctgacaattattttgacagtttgcgagaaaacaacactaatgacaac |
43003445 |
T |
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| Q |
128 |
aagctaattaaattgacaaagataaacaaaaatatagaagaaaatttaaaagactacgatttattttgaagatataaaatccacaacaattgcaatctca |
227 |
Q |
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| T |
43003446 |
aagctaattaa-ttgacaaagataaacaaaaatatagaagaaaatttaaaagactacgatttattttgaagatataaaatccacaacaattgcaatctca |
43003544 |
T |
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| Q |
228 |
ccatataaatgtacaaatttatatgtaaaactc----tatctgaccatgaattcatatgtaattgtcaaataaagcaaactaaaaaccccacatatattt |
323 |
Q |
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| T |
43003545 |
ccatataaatgtacaaatttatatgtaaaactctatatatctgaccatgaattcatatgtaattgtcaaataaagcaaactaaaaaccccacatatattt |
43003644 |
T |
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| Q |
324 |
atataggatatcttattgaaaccctctttaacaaaggtatatgatcccattaagtagtattat |
386 |
Q |
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| T |
43003645 |
atataggatatcttattgaaaccctctttaacaaaggtatatgatcccattaagtagtattat |
43003707 |
T |
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