View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16214_low_1 (Length: 375)
Name: NF16214_low_1
Description: NF16214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16214_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 45347795 - 45348138
Alignment:
| Q |
16 |
gatggaagacctcctcggacttctaaggatccacattaagcgtggcgtcaacctcgccgttcgtgatgttaatactagtgatccatatgccgtcgttaag |
115 |
Q |
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| T |
45347795 |
gatggaagacctcctcggacttctaaggatccgcattaagcgtggcgtcaacctcgccgttcgtgatgttaatactagtgatccatatgccgtcgttaag |
45347894 |
T |
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| Q |
116 |
atgggcaagcaggttatctttctatttccatcatcctaagttccttcctttgattttatctatatttatgtgcagtgcatatatgtattatgtagtaatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45347895 |
atgggcaagcaggttatctttctatttccatcatcctaagttccttcctttgattttatctatatttatgtgcagtgcatgtatgtattatgtagtaatg |
45347994 |
T |
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| Q |
216 |
attctcagcttgagagctataaataaatatgtacattaccataccatgttaattaatgcacatgatttatttgatcatcaattgaatacaaaactttgca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45347995 |
attctcagcttgagagctataaataaatatgtacattaccatatcatgttaattaatgcacatgatttatttgatcatcaattgaatacaaaactttgca |
45348094 |
T |
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| Q |
316 |
tagtaagtttgtataaaatatattttctaaaaatacactcaaac |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45348095 |
tagtaagtttgtataaaatatattttctaaaaatacactcaaac |
45348138 |
T |
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