View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16215_high_3 (Length: 334)
Name: NF16215_high_3
Description: NF16215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16215_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 37444324 - 37444033
Alignment:
| Q |
20 |
agattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcagcgagggt |
119 |
Q |
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| T |
37444324 |
agattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcagtgagggt |
37444225 |
T |
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| Q |
120 |
ttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagt |
219 |
Q |
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| T |
37444224 |
ttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagt |
37444125 |
T |
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| Q |
220 |
gaaaccaattttgaaccaaaattataagctatttttggaaagcttactgaaataagtagaaaatgtatcaatatgtgtgtatttgaacactaaaaagcgc |
319 |
Q |
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| T |
37444124 |
gaaaccaattttgaaccaaaattataagctatttttggaaagcttac------------------tatcaatatgtgtgtatttgaacactaaaaagcgc |
37444043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 142 - 295
Target Start/End: Original strand, 7492522 - 7492676
Alignment:
| Q |
142 |
acattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaaccaaaat |
241 |
Q |
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|||||||||| |||| | || |||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||||||| |||| |
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| T |
7492522 |
acattgacttggctaagatagctgttgttaaaaggaggattgagtgagcaatggtgcaaaagagaggata----gaatgaaaccaattttgaacctaaat |
7492617 |
T |
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| Q |
242 |
tataagcta-----tttttggaaagcttactgaaataagtagaaaatgtatcaatatgt |
295 |
Q |
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| T |
7492618 |
tataggctagtagtattttggaaagcttattgaattaagtagaaaaattatcaatatgt |
7492676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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