View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16215_high_4 (Length: 308)
Name: NF16215_high_4
Description: NF16215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16215_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 1508194 - 1507896
Alignment:
| Q |
10 |
caatgaatcctcaccatccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1508194 |
caatgaatcctcaccatccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggat |
1508095 |
T |
|
| Q |
110 |
gatagtggcagactatagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttcca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1508094 |
gatagtggcagactatagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttcca |
1507995 |
T |
|
| Q |
210 |
ttttaaggttagaacatgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattgtttggatcgacatgcttcagtttaacaccat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1507994 |
ttttaaggttagaacatgcaagaaaaccaagaataagcttagccaacccctttaagttgaaaatattgtttggatcgacatgcttcagtttaacgccat |
1507896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 3013848 - 3013563
Alignment:
| Q |
23 |
ccatccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagac |
122 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||| || ||||||| || | || |
|
|
| T |
3013848 |
ccatccatcttctggatgataaacttgcaactttgactttcccaacgtacccttttgtttgatttcttggtaatgatgtcccctgatgataatgataaac |
3013749 |
T |
|
| Q |
123 |
tatagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttaga |
222 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||| || ||||||| |||| ||||||||||||| |||||| | ||||||||||||| ||| |||| |
|
|
| T |
3013748 |
tatagcttacattgattggctctgttgtctcatggaaactcaagttgataagactttgaacagcttcttgtctcctttttggttccattttcaggctaga |
3013649 |
T |
|
| Q |
223 |
acatgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattgtttggatcgacatgcttcagtttaacaccat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||| |
|
|
| T |
3013648 |
acatgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattatttggatcaacatacttcagtttaccaccat |
3013563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 29 - 308
Target Start/End: Original strand, 2945581 - 2945860
Alignment:
| Q |
29 |
atcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagactatagc |
128 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||| || | |||||||| |
|
|
| T |
2945581 |
atcttctggatgataaacttacagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccccgatgataatgataaactatagc |
2945680 |
T |
|
| Q |
129 |
ttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttagaacatgc |
228 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||| |||||| ||||||| |||||| |
|
|
| T |
2945681 |
ttacattgatcggttctgttgtctcatggaaactcgagttgacaagactttgaacagcttcatgtctcttttttggtttcattttcaggttaggacatgc |
2945780 |
T |
|
| Q |
229 |
aagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattgtttggatcgacatgcttcagtttaacaccat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
2945781 |
aagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattatttggatcaacatgcttcagtttaccaccat |
2945860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 26 - 301
Target Start/End: Original strand, 2928937 - 2929212
Alignment:
| Q |
26 |
tccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagactat |
125 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| | || || ||||| |
|
|
| T |
2928937 |
tccatcttctggatgataaacttgcagctttgactttcccaacgtacccttttgtttgctttctttgtaatgatttcccctgatgacaatgacaaactat |
2929036 |
T |
|
| Q |
126 |
agcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttagaaca |
225 |
Q |
| |
|
||||||||||||| || || ||||||||||||| || |||||| |||| |||||||||||||||||||||| ||||||||||||| || || ||| |
|
|
| T |
2929037 |
agcttacattgatcggctctgttgtctcatggaaactcgagttgataagactttgaacagcttcatgtctcttctttggttccattttcgggaaagcaca |
2929136 |
T |
|
| Q |
226 |
tgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattgtttggatcgacatgcttcagttta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| |
|
|
| T |
2929137 |
agcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatgttatttggatcaacatagttcagttta |
2929212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 37794304 - 37794552
Alignment:
| Q |
24 |
catccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagact |
123 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||| || ||| |||||| ||||||||||||||||||| || ||||| |||| ||| | |
|
|
| T |
37794304 |
catccaacttctggatgaaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcccctgatgacagtgatagatt |
37794403 |
T |
|
| Q |
124 |
atagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttagaa |
223 |
Q |
| |
|
||||||||| ||| || || |||||||| |||| || | |||||||||| ||||||||||||||| ||||| ||||||||| || ||| ||||| |
|
|
| T |
37794404 |
atagcttaccgtgaccgggacctttgtctcaaggaaactcaggttgagaagaccttgaacagcttcatgcctcttgtctggttccatcttcaggctagaa |
37794503 |
T |
|
| Q |
224 |
catgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaa |
272 |
Q |
| |
|
|| ||||| ||||||||||| ||||||| ||| || ||||||||||||| |
|
|
| T |
37794504 |
caagcaaggaaaccaagaatgagcttaatcaaaccttttaagttgaaaa |
37794552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 2919434 - 2919685
Alignment:
| Q |
25 |
atccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagacta |
124 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||| || ||| |||||| | ||||||||||||||||||| || ||||| || | || |||| |
|
|
| T |
2919434 |
atccatcttctggatgaagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcccctgatgacagcgacaaacta |
2919533 |
T |
|
| Q |
125 |
tagcttacattgattggttccattgtctcatggaagcttaa---gttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttag |
221 |
Q |
| |
|
|| ||||| ||| || ||| ||||||| ||||| | | ||| | |||| ||||||||||||||| |||||| |||||||||||| || | | |
|
|
| T |
2919534 |
taacttaccgtgaccggcaccactgtctcaaggaaggtgatcaggttaataagaccttgaacagcttcatgcctcttatctggttccattttcagtcttg |
2919633 |
T |
|
| Q |
222 |
aacatgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaat |
273 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
2919634 |
aacaagcaaggaaaccaagaacgagcttaaccaaaccttttaagttgaaaat |
2919685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 40110264 - 40110322
Alignment:
| Q |
201 |
ttggttccattttaaggttagaacatgcaagaaaaccaagaataagcttaaccaacccc |
259 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
40110264 |
ttggtttcattataaggttacaacatgcaagaaaacaaagaattaatttaaccaacccc |
40110322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 23 - 304
Target Start/End: Complemental strand, 4917529 - 4917248
Alignment:
| Q |
23 |
ccatccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagac |
122 |
Q |
| |
|
||||||||||| ||||| ||||||||| | |||||||| |||||||||||||||||||| |||||||| |||||||| | || ||||||| || | || |
|
|
| T |
4917529 |
ccatccatcttttggattataaacttgcagctttgactctcccaacgcacccttttgttggctttcttggtaatgattttccctgatgataatgataaac |
4917430 |
T |
|
| Q |
123 |
tatagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttaga |
222 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| || ||||||||||||| | |||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
4917429 |
tatagcttacattgattggctcctttgtctcatgaaaacttaagttgagaaaattttgaacagcttcatgtctcttttttggttccatttcaaggctaga |
4917330 |
T |
|
| Q |
223 |
acatgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaatattgtttggatcgacatgcttcagtttaaca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| |||||||||||| || || || || |||| ||| ||||||||| |
|
|
| T |
4917329 |
acatgcaagaaaaccaagaataagcttagctaacccctgtaagttgaaaatgttattagggtcaacattctttagtttaaca |
4917248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 272
Target Start/End: Original strand, 28023317 - 28023565
Alignment:
| Q |
24 |
catccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtctccggatgatagtggcagact |
123 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||| || ||| |||||| |||||||||||| |||||| || ||||| ||| ||||| |
|
|
| T |
28023317 |
catccaacttctggatgaaaaacttggaactttgcctttcccagcgaaccattttgtcatctttctttgtaacgatgtcccctgatgacagtaatagact |
28023416 |
T |
|
| Q |
124 |
atagcttacattgattggttccattgtctcatggaagcttaagttgagaagagtttgaacagcttcatgtctcttacttggttccattttaaggttagaa |
223 |
Q |
| |
|
|||||| || ||| || || ||| |||| ||||||| | |||||||||| ||||||||||||||| ||||| ||||||||| || ||| ||||| |
|
|
| T |
28023417 |
atagctaaccgtgaccgggacctttgcctcaaggaagctcatgttgagaagaccttgaacagcttcatgcctcttgtctggttccatcttcaggctagaa |
28023516 |
T |
|
| Q |
224 |
catgcaagaaaaccaagaataagcttaaccaacccctttaagttgaaaa |
272 |
Q |
| |
|
|| ||||| ||||||||||| ||||||| ||| || ||||||||||||| |
|
|
| T |
28023517 |
caagcaaggaaaccaagaatgagcttaatcaaaccttttaagttgaaaa |
28023565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University