View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16215_low_2 (Length: 426)
Name: NF16215_low_2
Description: NF16215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16215_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 935981 - 936392
Alignment:
| Q |
18 |
atatactaatattttgttttctagagacatacacatactgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacc |
117 |
Q |
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| T |
935981 |
atatactaatattttgttttctagagacatacacatattgtcgccacccattaagacttattcttcattttcttgcaaagcccgccatagacttaccacc |
936080 |
T |
|
| Q |
118 |
tttgaccttaaaaa--ctctttctcttcaacacgttttttgttgttcttgttcttaaatccttcttcaatatcatttaca-------------accttaa |
202 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| | || ||||||| |||||||||||| ||||| ||| ||||||| |
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| T |
936081 |
tttgaccttaaaaactctctttctcttcaacacgttttttgttct--ttcttcttaactccttcttcaatgtcattaacaaccccttatttacaccttaa |
936178 |
T |
|
| Q |
203 |
acttgttaataataatcattccaaaaatttctacaaaacnnnnnnnnnnnngctcaaaacctagttcctttgtttaacata---------tcattcattg |
293 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
936179 |
acttgttaat-ataatcattccaaaaatttctacaaaacttttttctttttgctcaaaacctagttcctttgtttaacatatcattcatttcattcattg |
936277 |
T |
|
| Q |
294 |
tagtaacactttctacttcttgcttaattannnnnnnnnnnnnnnnnnnnnnnngtagcaaaagtctaaaatgttctaaacatgtctgaagaatctttga |
393 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936278 |
tagtaacactttctacgtcttgcttaattatttttgttttttcaagtgttttttgtagcaaaagtctaaaatgttctaaacatgtctgaagaatctttga |
936377 |
T |
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| Q |
394 |
attcagacgcgtttt |
408 |
Q |
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| T |
936378 |
attcagacgcgtttt |
936392 |
T |
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