View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16215_low_3 (Length: 332)

Name: NF16215_low_3
Description: NF16215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16215_low_3
NF16215_low_3
[»] chr8 (16 HSPs)
chr8 (121-312)||(14646748-14646940)
chr8 (18-93)||(14646979-14647054)
chr8 (18-87)||(14665646-14665715)
chr8 (177-268)||(14664588-14664679)
chr8 (179-280)||(12080373-12080475)
chr8 (18-90)||(12080650-12080721)
chr8 (19-90)||(12109692-12109764)
chr8 (19-90)||(12070787-12070860)
chr8 (121-164)||(14631914-14631957)
chr8 (18-92)||(14664359-14664433)
chr8 (1-45)||(14647063-14647107)
chr8 (138-180)||(14664493-14664535)
chr8 (1-58)||(14632033-14632090)
chr8 (1-58)||(14638626-14638683)
chr8 (208-268)||(12070565-12070624)
chr8 (121-180)||(14665538-14665598)


Alignment Details
Target: chr8 (Bit Score: 181; Significance: 9e-98; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 121 - 312
Target Start/End: Complemental strand, 14646940 - 14646748
Alignment:
Q  121 tagccgctgctacccacttgttctttccactggctgctcttcactatacatcaactcacacaggtttgcattgtatctgaatacactttttt-gcatctg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  14646940 tagccgctgctacccacttgttctttccactggctgctcttcactatacatcaactcacacaggtttgcattggatctgaatacactttttttgcatctg 14646841  T
Q  220 ttcattttaatttctggaaaatcatcttattacttcagtgttctaatttaattttttatcttgttgcagcttcattgtgacctgatgatagtc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14646840 ttcattttaatttctggaaaatcatcttattacttcagtgttctaatttaattttttatcttgttgcagcttcattgtgacctgatgatagtc 14646748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 14647054 - 14646979
Alignment:
Q  18 attttaaattacataattgcccatcactttaaaagaaaaggtgggggtttatggtccaaagtgaaaagttgcaaat 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14647054 attttaaattacataattgcccatcactttaaaagaaaaggtgggggtttatggtccaaagtgaaaagttgcaaat 14646979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 14665715 - 14665646
Alignment:
Q  18 attttaaattacataattgcccatcactttaaaagaaaaggtgggggtttatggtccaaagtgaaaagtt 87  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||||    
T  14665715 attttaaattacataattgcccatcactttaaaagaaaaactgggggtttttggtccaaaatgaaaagtt 14665646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 14664588 - 14664679
Alignment:
Q  177 cacacaggtttgcattgtatctgaatacacttttttgcatctgttcattttaatttctggaaaatcatcttattacttcagtgttctaattt 268  Q
    ||||||||||||||||| |||||| | ||||||||  ||||| ||||||||||||| || ||||||| ||||||| ||| ||||||||||||    
T  14664588 cacacaggtttgcattggatctgattccactttttgtcatctcttcattttaatttttgcaaaatcaacttattatttccgtgttctaattt 14664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 12080475 - 12080373
Alignment:
Q  179 cacaggtttgcattgtatctgaatacacttttttgcatctgttcattttaatttctggaaaatcatcttattacttcagtgttctaatt-taatttttta 277  Q
    ||||||| || |||| |||||| | |||||||||||||||||||||| |||||||||  |||||||| ||||||||| || |||||||| |||||| |||    
T  12080475 cacaggtatgaattggatctgattgcacttttttgcatctgttcattataatttctgtcaaatcatcatattacttccgtattctaattataatttatta 12080376  T
Q  278 tct 280  Q
    |||    
T  12080375 tct 12080373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12080721 - 12080650
Alignment:
Q  18 attttaaattacataattgcccatcactttaaaagaaaaggtgggggtttatggtccaaagtgaaaagttgca 90  Q
    |||||||||||||||||||||||||||||||||||||||  ||||| ||| ||||||||| |||||| |||||    
T  12080721 attttaaattacataattgcccatcactttaaaagaaaatatggggcttt-tggtccaaattgaaaatttgca 12080650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 12109764 - 12109692
Alignment:
Q  19 ttttaaattacataattgcccatcactttaaaagaaaaggt-gggggtttatggtccaaagtgaaaagttgca 90  Q
    |||||||||||||| ||||||| |||||||||||||| ||| ||| |||| ||||||||||||||||||||||    
T  12109764 ttttaaattacatatttgcccaccactttaaaagaaatggtagggtgtttttggtccaaagtgaaaagttgca 12109692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 12070860 - 12070787
Alignment:
Q  19 ttttaaattacataattgcccatcactttaaaagaaaaggt--gggggtttatggtccaaagtgaaaagttgca 90  Q
    |||||||||||||| ||||||||||||| ||||||||||||  ||| |||| |||||||||||||||| |||||    
T  12070860 ttttaaattacatatttgcccatcacttaaaaagaaaaggtgcgggtgtttttggtccaaagtgaaaacttgca 12070787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 14631957 - 14631914
Alignment:
Q  121 tagccgctgctacccacttgttctttccactggctgctcttcac 164  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  14631957 tagccgctgctacccacttgttctttccactggccgctcttcac 14631914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 14664359 - 14664433
Alignment:
Q  18 attttaaattacataattgcccatcactttaaaagaaaaggtgggggtttatggtccaaagtgaaaagttgcaaa 92  Q
    ||||| |||| ||||||| ||||||||||||||||||||  | | ||||| ||||||||| ||||||||||||||    
T  14664359 attttgaatttcataatttcccatcactttaaaagaaaaactcgaggtttttggtccaaaatgaaaagttgcaaa 14664433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 14647107 - 14647063
Alignment:
Q  1 ttaattaaaaatatggaattttaaattacataattgcccatcact 45  Q
    |||||||||||||||||||||||||||||| |||| |||||||||    
T  14647107 ttaattaaaaatatggaattttaaattacaaaattacccatcact 14647063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 14664493 - 14664535
Alignment:
Q  138 ttgttctttccactggctgctcttcactatacatcaactcaca 180  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||    
T  14664493 ttgttatttccactggccgctcttcagtatacatcaactcaca 14664535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14632090 - 14632033
Alignment:
Q  1 ttaattaaaaatatggaattttaaattacataattgcccatcactttaaaagaaaagg 58  Q
    ||||| ||||||||  |||| |||||||||||||| ||||||  ||||||||||||||    
T  14632090 ttaataaaaaatattaaattctaaattacataattacccatctttttaaaagaaaagg 14632033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14638683 - 14638626
Alignment:
Q  1 ttaattaaaaatatggaattttaaattacataattgcccatcactttaaaagaaaagg 58  Q
    ||||| ||||||||  |||||||| |||||||||| ||||||  ||||||||||||||    
T  14638683 ttaataaaaaatattaaattttaagttacataattacccatctttttaaaagaaaagg 14638626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 12070624 - 12070565
Alignment:
Q  208 tttttgcatctgttcattttaatttctggaaaatcatcttattacttcagtgttctaattt 268  Q
    |||||||||||||||||| |||||||| |  |||||| |||||||||  ||||||||||||    
T  12070624 tttttgcatctgttcattataatttct-gccaatcattttattacttttgtgttctaattt 12070565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 14665598 - 14665538
Alignment:
Q  121 tagccgctgctacccac-ttgttctttccactggctgctcttcactatacatcaactcaca 180  Q
    ||||||| ||||||||  ||||||||||||||| | |||| ||| ||||||||||||||||    
T  14665598 tagccgcagctacccaagttgttctttccactgaccgctcatcaatatacatcaactcaca 14665538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University