View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_high_10 (Length: 376)
Name: NF16216_high_10
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 17275803 - 17275520
Alignment:
| Q |
17 |
aagaatgaatttagatggagaagaaaatgtgcataatacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggttt |
116 |
Q |
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| T |
17275803 |
aagaatgaatttagatggagaagaaaatgtgcataatacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggttt |
17275704 |
T |
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| Q |
117 |
gtccactaataccagcattagagagtgtccctccaatggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaa |
216 |
Q |
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| T |
17275703 |
gtccactaataccagcattagagagtgtccctccaatagttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaa |
17275604 |
T |
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| Q |
217 |
cacatcaatccatagttgttcccctccaacatcaacatagtatccaaatccaaccttaggatcctcaaaaaccttaattccaac |
300 |
Q |
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| T |
17275603 |
cacatcaatccatagttgttcccctccaacatcaacatagtatccaaatccaaccttaggatcctcaaaaacctcaattccaac |
17275520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 11476635 - 11476551
Alignment:
| Q |
20 |
aatgaatttagatggagaagaaaatgtgcataatacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaa |
111 |
Q |
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| T |
11476635 |
aatgaatttagatggagaagaaaatgtgctta-------cgagtaacaacgtccaattgatgaacactagtaatttgaggaccataacgaaa |
11476551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 255
Target Start/End: Complemental strand, 17243450 - 17243362
Alignment:
| Q |
167 |
taatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacata |
255 |
Q |
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| T |
17243450 |
taatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacata |
17243362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 55 - 263
Target Start/End: Complemental strand, 52443604 - 52443396
Alignment:
| Q |
55 |
cataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctccaatg |
154 |
Q |
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| T |
52443604 |
cataccagtaatcacatcgaattcatgaacgttggtgatttgaggtccgtaaagaaacgtctggccactaattccagcattggaaagtgttcctccaacc |
52443505 |
T |
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| Q |
155 |
gttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacat |
254 |
Q |
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| T |
52443504 |
gtgaggtaaagatagtcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaacatcaatccatagttgttctcctccaacatcaacat |
52443405 |
T |
|
| Q |
255 |
agtatccaa |
263 |
Q |
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|||| |||| |
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| T |
52443404 |
agtaaccaa |
52443396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 255
Target Start/End: Original strand, 52454513 - 52454716
Alignment:
| Q |
52 |
atacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctcca |
151 |
Q |
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|||| ||||||||||||||||||||| ||||||| | | ||||||||||||| | || |||||||||||||||||||||||||||||||| || || ||| |
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| T |
52454513 |
atacgtaccagtaacaacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccacca |
52454612 |
T |
|
| Q |
152 |
atggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaa |
251 |
Q |
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| T |
52454613 |
accgataaatacaaataatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatcta |
52454712 |
T |
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| Q |
252 |
cata |
255 |
Q |
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|||| |
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| T |
52454713 |
cata |
52454716 |
T |
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