View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_high_2 (Length: 706)
Name: NF16216_high_2
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 322 - 690
Target Start/End: Original strand, 10306411 - 10306770
Alignment:
| Q |
322 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
421 |
Q |
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| T |
10306411 |
tctcattccaccatcacttctctctctctaacctctttcgtttttctctccatggattcagtattctccaccattctcatcattctcgctattctcttca |
10306510 |
T |
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| Q |
422 |
tcaccttcatgctttcactcatgctccgtttccttcaaatccgcataaatcgccgacgtctcctctccgattcaacaccaccgcgatcaccacaaccacc |
521 |
Q |
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| T |
10306511 |
tcaccttcatgctttcactcatgctccgtttccttcaactccgcataaatcgccgacgtctcctctccgattcaacaccaccgcgatcacca-------- |
10306602 |
T |
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| Q |
522 |
gccaccattgacgatgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattcctttccatttcacctccgattcaacacca |
621 |
Q |
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| T |
10306603 |
-ccaccattgacgacgattgttactgagtcgcctccagcttcactaaacatcgactcactccctccgattccgttccatttcacctccgattcaacacca |
10306701 |
T |
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| Q |
622 |
ccgccgtcgcaaccacctccaccggcgcgggaaatacaacgagcaatcgattcacttcctacgtttcat |
690 |
Q |
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| T |
10306702 |
ccgtcgtcgcaaccacctcaacctgcgccggaaatacaacgagcaatcgattcacttcctacgtttcat |
10306770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 10306136 - 10306414
Alignment:
| Q |
20 |
tttcatgaaacatagaagacgaaggacaataaccgattactgtgaaatactaacattaccactactgcatttacatttttgtactatatgaatattaa-t |
118 |
Q |
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| T |
10306136 |
tttcatgaaacatagaagacgaaggacaataaccgattactgtaaaatactaacattagtactactgtatttacatttttgtactatatgaatattaaat |
10306235 |
T |
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| Q |
119 |
tatattgaagattgatactccgtttacaaaatgaaatcagaagatacaaaaatgctctcatccacaccaaaaccaaccacacgcatgaggcaaa-ggtga |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
10306236 |
tatattgaagattaatactccgtttacaaaatgaaatcagaagatacaaaaatgctctcattcacaccaaaaccaaccacacgcatgaggcaaagggtga |
10306335 |
T |
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| Q |
218 |
cttatatatttctgttacaacttagaacaatgcaacactgtcattgcaaaacaacaacactcactatgtatcactgttctc |
298 |
Q |
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| T |
10306336 |
ct--catatttctgttacaacttagaacaatgcaacactgtcattgcaaaacaacaacactcactatgtatcattgttctc |
10306414 |
T |
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