View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_high_5 (Length: 576)
Name: NF16216_high_5
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 24 - 562
Target Start/End: Original strand, 30897238 - 30897785
Alignment:
| Q |
24 |
gtagattcttgacattgttccaccatgcgtccaccaatgaggagagtgtattacaaaataggagataaagtagaagtatgcagtagagaagaggggtttt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30897238 |
gtagattcttgacattgttccaccatgcgtccaccaatgaggagagtggattacaaaataggagataaagtagaagtatgcagtaaagaagaggggtttt |
30897337 |
T |
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| Q |
124 |
tcggttcgtactacaaagccagagttgtttcacgcctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctct |
223 |
Q |
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| T |
30897338 |
tcggttcgtactacaaagccagagttgtttcacgtctccaaaatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctct |
30897437 |
T |
|
| Q |
224 |
tgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataat |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897438 |
tgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataat |
30897537 |
T |
|
| Q |
324 |
gatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctgaagagggccattgctattgggtgtatttcaccactagctcagagacgaatt |
423 |
Q |
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| T |
30897538 |
gatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctgaagagggccattgctattgggtgtatttcagcactagctcagagacgaatt |
30897637 |
T |
|
| Q |
424 |
actaccgctatgatcagatcagagttcatcatgagtggtttggtggagagtggatcttggatg---------cataattcatgattataaacattgctct |
514 |
Q |
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| T |
30897638 |
actaccgctatgatcagatcagagttcatcatgagtggtttggtggagagtggatcttggatgcataattgtcataattcatgattataaacattggtct |
30897737 |
T |
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| Q |
515 |
tgttttatgtattttgaattggttattggcaataaacttcagtctctt |
562 |
Q |
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| T |
30897738 |
tgttttatgtattttgaattggttattggcaataaacttcagtctctt |
30897785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 30963206 - 30963129
Alignment:
| Q |
45 |
accatgcgtccaccaatgaggagagtgtattacaaaataggagataaagtagaagtatgcagtagagaagaggggttt |
122 |
Q |
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| T |
30963206 |
accatgcgtccaccaatgaagagagtggattacaaggtaggagataaagtagaagtatgtagtaaagaagaagggttt |
30963129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 264 - 346
Target Start/End: Complemental strand, 30962987 - 30962905
Alignment:
| Q |
264 |
ccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaat |
346 |
Q |
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| T |
30962987 |
ccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttgatgttttttataaagatggttggtgggtagggaaaat |
30962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 165 - 367
Target Start/End: Complemental strand, 5963678 - 5963476
Alignment:
| Q |
165 |
aatggacaatacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccac |
264 |
Q |
| |
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||||||||||| |||||| ||||| || ||||||| || || |||||| ||| ||| |||||||| || ||||||||||||| |||||| ||| | |
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| T |
5963678 |
aatggacaatatttggttcgttacaaaaaccttttgcaagatgataagtctagacttctcttagagaccgttcatccatatgagcttcgtccattaccgc |
5963579 |
T |
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| Q |
265 |
cacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcat |
364 |
Q |
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| T |
5963578 |
cacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagggcaaatcactagtgagaagatcat |
5963479 |
T |
|
| Q |
365 |
cac |
367 |
Q |
| |
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||| |
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| T |
5963478 |
cac |
5963476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 38743810 - 38743700
Alignment:
| Q |
25 |
tagattcttgacattgttccaccatgcgtccaccaatgaggagagtgtattacaaaataggagataaagtagaagtatgcagtagagaagaggggttttt |
124 |
Q |
| |
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||||||||||| |||| | |||||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||| | |||||| |||||| | |
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| T |
38743810 |
tagattcttgatcttgtgcaaccatgcgtccaccggtgaagagagttgattacaaggtaggagataaagtagaagtatgcagcaaagaagaagggtttgt |
38743711 |
T |
|
| Q |
125 |
cggttcgtact |
135 |
Q |
| |
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||||| |||| |
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| T |
38743710 |
aggttcatact |
38743700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 135
Target Start/End: Original strand, 38788617 - 38788707
Alignment:
| Q |
45 |
accatgcgtccaccaatgaggagagtgtattacaaaataggagataaagtagaagtatgcagtagagaagaggggtttttcggttcgtact |
135 |
Q |
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|||||||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||| | |||||| |||||| | |||||||||| |
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| T |
38788617 |
accatgcgtccaccggtgaagagagttgattacaaggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcgtact |
38788707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 38782652 - 38782762
Alignment:
| Q |
252 |
cgtccaacaccaccacgtgttcgtaatcctcatgaa-tttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcacc |
350 |
Q |
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||||||| |||||||| ||||||||||||| |||| ||| |||||||||| |||||||||| || |||| ||||||||||||||||| ||||| | |
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| T |
38782652 |
cgtccaataccaccacatgttcgtaatcctt-tgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttggtgggtaggtaaaatcgct |
38782750 |
T |
|
| Q |
351 |
agtgagaagatc |
362 |
Q |
| |
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|| ||||||||| |
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| T |
38782751 |
agcgagaagatc |
38782762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 38788864 - 38788934
Alignment:
| Q |
292 |
aactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatc |
362 |
Q |
| |
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||||||||||||||||||||| || |||| |||||||||||||||||| ||||| | || ||||||||| |
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| T |
38788864 |
aactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaagatc |
38788934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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