View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16216_high_8 (Length: 455)

Name: NF16216_high_8
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16216_high_8
NF16216_high_8
[»] chr1 (25 HSPs)
chr1 (12-437)||(13244110-13244535)
chr1 (160-410)||(13271791-13272041)
chr1 (79-406)||(19278827-19279151)
chr1 (107-437)||(13080552-13080879)
chr1 (112-430)||(13086292-13086613)
chr1 (84-309)||(12963575-12963797)
chr1 (201-323)||(13007489-13007611)
chr1 (218-323)||(13204748-13204853)
chr1 (201-305)||(30367889-30367993)
chr1 (161-410)||(13064954-13065200)
chr1 (114-323)||(13101289-13101495)
chr1 (201-323)||(13069957-13070079)
chr1 (115-299)||(13214132-13214313)
chr1 (114-322)||(19727443-19727648)
chr1 (204-319)||(13161814-13161929)
chr1 (204-318)||(13130122-13130236)
chr1 (204-319)||(13094692-13094807)
chr1 (352-410)||(13101205-13101263)
chr1 (12-88)||(19278733-19278809)
chr1 (352-410)||(13070105-13070163)
chr1 (352-410)||(13094604-13094662)
chr1 (352-410)||(13130033-13130091)
chr1 (352-410)||(13204664-13204722)
chr1 (352-410)||(12963804-12963862)
chr1 (352-406)||(13161730-13161784)
[»] chr6 (1 HSPs)
chr6 (201-324)||(31396456-31396580)


Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Original strand, 13244110 - 13244535
Alignment:
Q  12 aagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttattgcc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244110 aagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttattgcc 13244209  T
Q  112 tgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244210 tgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatgg 13244309  T
Q  212 aacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaaca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13244310 aacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattggggaagcgaaaattattcaagagatcaaagataattgtctaaca 13244409  T
Q  312 caagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctc 411  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13244410 caagaggagaatttaatcaataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctc 13244509  T
Q  412 tggcatttcagcacaagtgcgctatc 437  Q
    ||||||||||||||||||||||||||    
T  13244510 tggcatttcagcacaagtgcgctatc 13244535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 160 - 410
Target Start/End: Complemental strand, 13272041 - 13271791
Alignment:
Q  160 atgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactca 259  Q
    |||| |||||||| |||||||||||  | | |||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13272041 atgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagttagttcaggtctaagttggttcttttggcttgtttcaactca 13271942  T
Q  260 tcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataag 359  Q
    ||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| || ||||| |||||||||    
T  13271941 tcctaatgtggaagcaaaacttattcaagagatcaaagatcattgtctaacacaagaggagaatttgatcaataatttaaatgttgaaaacattgataag 13271842  T
Q  360 cttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    ||  |||||||||||| ||| ||||||||||||||||| || |||||||||    
T  13271841 ctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcct 13271791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 79 - 406
Target Start/End: Original strand, 19278827 - 19279151
Alignment:
Q  79 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagaga 178  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| ||   |||||| |||||| |||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacga---atgagatgtatattagaga 19278923  T
Q  179 cactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaa 278  Q
    ||||||  | |||||||| | |||||| ||||||||||||||||| ||||| | ||||||||||||||| || ||||||||||||||||| ||||| |||    
T  19278924 cactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttcttttggctcgtatcaactcatcctattgtcgaagcaaaa 19279023  T
Q  279 attattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttcatggag 378  Q
    ||||||||||||||||| | ||| ||| ||||| ||||||| |||||||||   ||||| |  ||| || || |||||||||| ||||| ||||||||||    
T  19279024 attattcaagagatcaaggttaactgtttaacaaaagaggataatttgatcacaaattttagtgtgaaagagcttgataagctagtttatcttcatggag 19279123  T
Q  379 ccatatgtgaaaccttgaggctatatcc 406  Q
    | ||||||||| |||| ||||| |||||    
T  19279124 ctatatgtgaagccttaaggctttatcc 19279151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 107 - 437
Target Start/End: Original strand, 13080552 - 13080879
Alignment:
Q  107 ttgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcagga 206  Q
    |||| |||| ||||| |||||| ||||| |||||| ||||||||||||| |   ||||| |||||| ||||| ||| |  | |||||||| | |||||||    
T  13080552 ttgcttgcttaaagatctaatggaggaaggattggaaaagggggaaatggt---tgagaggtatattagagatactacaatcaatctcttggttgcagga 13080648  T
Q  207 aatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtc 306  Q
    ||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||  || || |  ||||||||||||||||||||||||||||||     
T  13080649 aatggaacaattagtacaggtctcacttggtttttttggctggtttcaacgcatcctagggtagatggtaaaattattcaagagatcaaagataattgtt 13080748  T
Q  307 taacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcc 406  Q
    ||| ||| || |||||||| |||| |||||||   |||||| || |||||||||| ||||||||||||||||||||||||||| |||| |||||||||||    
T  13080749 taaaacacgatgagaattttatcgctaatttaggtgtggaagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatcc 13080848  T
Q  407 tcctctggcatttcagcacaagtgcgctatc 437  Q
    | || | ||||||||||||||||| ||||||    
T  13080849 ttctgtagcatttcagcacaagtgtgctatc 13080879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 112 - 430
Target Start/End: Complemental strand, 13086613 - 13086292
Alignment:
Q  112 tgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcga---tgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaa 208  Q
    ||||||| | ||| ||||||||| | |||||||| | ||||||| | ||   ||| |||||||| |||||||||||  | |||||||| | ||||||||     
T  13086613 tgctaaaggcactgatgaaggaaggcttgggaaatgaggaaatggttgaaattgataagtatattagagacactgcattcaatctcttagctgcaggaag 13086514  T
Q  209 tggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtcta 308  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||   || |||||||| ||||| ||||||||||| |||||||||||||||    
T  13086513 tggaacagttagttcaggtctaagttggttctcttggcttgtttcaactcatttcatagtggaagctaaaataattcaagagataaaagataattgtcta 13086414  T
Q  309 acacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctc 408  Q
     |||| ||||| |||||| ||  ||||||||  || |||||| || |||| || || |||||||||||||| ||||||||| | |||||||| |||||||    
T  13086413 tcacatgaggataatttggtcactaatttaagagttgaaaagcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctc 13086314  T
Q  409 ctctggcatttcagcacaagtg 430  Q
    || |  ||||||||||||||||    
T  13086313 ctgtaccatttcagcacaagtg 13086292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 84 - 309
Target Start/End: Original strand, 12963575 - 12963797
Alignment:
Q  84 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactg 183  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||   | |||||| ||||| | | ||||      
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaatg---gctgagaaatatattataaacacaa 12963671  T
Q  184 cggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattat 283  Q
    |  | |||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  12963672 cactcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaaactaaaattat 12963771  T
Q  284 tcaagagatcaaagataattgtctaa 309  Q
    ||||||||| |||||||||| |||||    
T  12963772 tcaagagattaaagataattttctaa 12963797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 13007611 - 13007489
Alignment:
Q  201 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 300  Q
    ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  13007611 gcaggaaatggcacaattagttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaatcaaagata 13007512  T
Q  301 attgtctaacacaagaggagaat 323  Q
    | || |  |||||||||||||||    
T  13007511 actggcccacacaagaggagaat 13007489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 13204853 - 13204748
Alignment:
Q  218 tagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacacaagag 317  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||  |||||||||    
T  13204853 tagttcaggtctaagttggtttttttggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacacaagag 13204754  T
Q  318 gagaat 323  Q
    ||||||    
T  13204753 gagaat 13204748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 201 - 305
Target Start/End: Original strand, 30367889 - 30367993
Alignment:
Q  201 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 300  Q
    ||||| ||||| ||| |||||||| |||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30367889 gcaggtaatggcacacttagttcaagtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagagatcaaagata 30367988  T
Q  301 attgt 305  Q
    |||||    
T  30367989 attgt 30367993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 161 - 410
Target Start/End: Original strand, 13064954 - 13065200
Alignment:
Q  161 tgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcat 260  Q
    |||||||||| | ||||||||||| || ||||| ||    || ||||| || ||| ||||||||||||| ||||||||||||||||||||||||  ||||    
T  13064954 tgagaagtatcttagagacactgcagtcaatctattgttagcgggaaacggcacagttagttcaggtctcagttggttcttttggcttgtttcatgtcat 13065053  T
Q  261 cctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacacaagaggagaatttgatcgataatttaaacgtggaaaagattgataagc 360  Q
    ||| |||||||||| || |||||||||||||| ||||||||||||||| |  | || || || |||||   || || ||  ||||||||| ||||||| |    
T  13065054 cctgttgtggaagccaagattattcaagagatgaaagataattgtctatctgatgatgaaaacttgat---tacttcaattgtggaaaagcttgataaac 13065150  T
Q  361 ttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |  ||||||| || ||||| ||||||||| |||| ||||| |||||||||    
T  13065151 taatttacctccacggagctatatgtgaagccttaaggctttatcctcct 13065200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 114 - 323
Target Start/End: Complemental strand, 13101495 - 13101289
Alignment:
Q  114 ctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaa 213  Q
    ||||||| ||||| ||||||| |||  |||||||||||||||   |||||||||||| | ||||||| ||   | | ||||||    |||||||||||      
T  13101495 ctaaaagcactaacgaaggaaggatctggaaagggggaaatg---gatgagaagtatcttagagacaatgtaatcactctctttttagcaggaaatggcc 13101399  T
Q  214 caattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacaca 313  Q
    || ||||||||| ||| |||||||| || ||||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||  |||||    
T  13101398 cagttagttcagctctcagttggtttttctggcttgtttccactcatcctattgtggaagccaaaataattcaagaaatcaaagataactgtcctacaca 13101299  T
Q  314 agaggagaat 323  Q
    ||||||||||    
T  13101298 agaggagaat 13101289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 13069957 - 13070079
Alignment:
Q  201 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagata 300  Q
    ||||||||||| ||| ||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  13069957 gcaggaaatggcacagttacttcaggtctcagttggtttttctggcttgtttcaactcatcctattgtggaagccaaaattattcaagaaataaaagata 13070056  T
Q  301 attgtctaacacaagaggagaat 323  Q
    | || |  |||||||||||||||    
T  13070057 actggcccacacaagaggagaat 13070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 115 - 299
Target Start/End: Complemental strand, 13214313 - 13214132
Alignment:
Q  115 taaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaac 214  Q
    |||||| ||||||||||||| |||| |||||||||||||||   |||||||||||| | ||||||| |||| | | ||||||    |||||||||||  |    
T  13214313 taaaagcactaatgaaggaaggatttggaaagggggaaatg---gatgagaagtatcttagagacaatgcgatcactctctttttagcaggaaatggccc 13214217  T
Q  215 aattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagat 299  Q
    | || |||||||||| | |||||| || ||||||||||||||||||| |||||||||||| |||||||||||||| || ||||||    
T  13214216 agttcgttcaggtctcatttggtttttctggcttgtttcaactcatcttattgtggaagctaaaattattcaagaaataaaagat 13214132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 114 - 322
Target Start/End: Complemental strand, 19727648 - 19727443
Alignment:
Q  114 ctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagagacactgcggtaaatctcttcggtgcaggaaatggaa 213  Q
    ||||||| ||||||||||||| |||  ||||||||||||||||   ||||||||||| | ||||||| |    | | ||||||    |||||||||||      
T  19727648 ctaaaagcactaatgaaggaaggatctggaaagggggaaatga---atgagaagtatcttagagacaatttactcactctctttttagcaggaaatggcc 19727552  T
Q  214 caattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataattgtctaacaca 313  Q
    || ||||| ||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| || |  |||||    
T  19727551 cagttagtacaggtctcagttggtttttttggcttgtttcgactcatcctattgtcgaagccaaaattattcaagaaatcaaagataactggcccacaca 19727452  T
Q  314 agaggagaa 322  Q
    |||||||||    
T  19727451 agaggagaa 19727443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 13161929 - 13161814
Alignment:
Q  204 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 303  Q
    ||||||||  |||||||||||| ||| |||||||| || |||||  |||||||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  13161929 ggaaatggttcaattagttcagctctcagttggtttttctggctcctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13161830  T
Q  304 gtctaacacaagagga 319  Q
    | ||||||||||||||    
T  13161829 ggctaacacaagagga 13161814  T

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Target: chr1; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 318
Target Start/End: Complemental strand, 13130236 - 13130122
Alignment:
Q  204 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 303  Q
    ||||||||  |||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||||||  ||||| ||||||||||||||||||||||    
T  13130236 ggaaatggttcaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcaaagataatt 13130137  T
Q  304 gtctaacacaagagg 318  Q
    |  ||||||||||||    
T  13130136 ggttaacacaagagg 13130122  T

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Target: chr1; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 13094807 - 13094692
Alignment:
Q  204 ggaaatggaacaattagttcaggtctaagttggttcttttggcttgtttcaactcatcctattgtggaagcgaaaattattcaagagatcaaagataatt 303  Q
    |||||||| ||||||||||||| ||| |||||||| || |||||| |||||||| |||||||||||||||  ||||| ||||||||||||| ||||||||    
T  13094807 ggaaatggtacaattagttcagctctcagttggtttttctggcttctttcaacttatcctattgtggaagaaaaaatcattcaagagatcagagataatt 13094708  T
Q  304 gtctaacacaagagga 319  Q
    |  |||||| ||||||    
T  13094707 ggttaacacgagagga 13094692  T

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Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 13101263 - 13101205
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||    
T  13101263 ttgataagctagtgtacctccatggagctatatgtgaaaccttgaggctttatcctcct 13101205  T

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Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 19278733 - 19278809
Alignment:
Q  12 aagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaaga 88  Q
    |||||||||| || ||||| ||||||||||||| |||||||| | ||||||||| || ||||||||||  |||||||    
T  19278733 aagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 13070105 - 13070163
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    ||||||| || || |||||||||||||| ||||||||||||||||| || |||||||||    
T  13070105 ttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcct 13070163  T

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Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 13094662 - 13094604
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||||    
T  13094662 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13094604  T

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Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 13130091 - 13130033
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||||||    
T  13130091 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcct 13130033  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 410
Target Start/End: Complemental strand, 13204722 - 13204664
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |||||||||| || |||||||||||||| ||||||||| ||||||| || |||||||||    
T  13204722 ttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcct 13204664  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 410
Target Start/End: Original strand, 12963804 - 12963862
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcct 410  Q
    |||||||||||||||| ||||||||||| || |||||| | || ||||| |||||||||    
T  12963804 ttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcct 12963862  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 13161784 - 13161730
Alignment:
Q  352 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcc 406  Q
    |||||||||| || ||||| |||||||| |||||||||||||| ||||| |||||    
T  13161784 ttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcc 13161730  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 324
Target Start/End: Original strand, 31396456 - 31396580
Alignment:
Q  201 gcaggaaatggaacaattagttcaggtctaagttggttcttttggcttgttt-caactcatcctattgtggaagcgaaaattattcaagagatcaaagat 299  Q
    ||||||||||| |||||||||||| ||||  ||||||| || |||||||||| |||||||||||| ||||||||| |||||||||||||||||  |||||    
T  31396456 gcaggaaatggcacaattagttcaagtctcggttggtttttctggcttgttttcaactcatcctaatgtggaagccaaaattattcaagagattcaagat 31396555  T
Q  300 aattgtctaacacaagaggagaatt 324  Q
    || |||| ||| ||| | |||||||    
T  31396556 aactgtcaaacccaacatgagaatt 31396580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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