View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_1 (Length: 807)
Name: NF16216_low_1
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Complemental strand, 17071704 - 17071119
Alignment:
| Q |
18 |
ttatctatgtatttggatatattctttattgtgatggtttttggtatgattgatttaatgaaaagcaattgactaagcttctcttgtatgcttaaatgag |
117 |
Q |
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| T |
17071704 |
ttatccatgtatttggatatattatttattgtgttggtttttggtatgattgatttaatgaaaagcaattgactaagcttctcttgtatgctgaaatgag |
17071605 |
T |
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| Q |
118 |
ttattttctgccttttgtgtatcaattgaaggttagtgagaattgattatgttagtgctaagattttttaatggtattttctgaagttctttgatttgat |
217 |
Q |
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| T |
17071604 |
ttattttctgccttttgtgtatcaattgaaggttagtgagaattgattatgttagtgctaagattttttaaaggtattttctgaagttctttgatttgat |
17071505 |
T |
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| Q |
218 |
aaattaagataactttgatgaatttctttgtcaatcttcttaagcgtcaatgttttatagtccctgattaattttaacttgcatttggtctggaatgctt |
317 |
Q |
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| T |
17071504 |
aaattaagataactttgatgaatttctttgtcaatcttcttaagcgtcaatgttttatagtccctgattaattttaacttgcatttggtctggaatgttt |
17071405 |
T |
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| Q |
318 |
ttacctcctattttttgtacttttcggtccattccttgcttcaattgtgatgtagagctatgaagcaccgacacagacacggataacagacacgacattg |
417 |
Q |
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| T |
17071404 |
ttacgtcctattttttgtacttttcggtccattccttgcttcaattgtgatgtagagctatgaagcaccgacacaga-acggatagcagacacgacattg |
17071306 |
T |
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| Q |
418 |
acaatgacacaatattattaagaaaatagaagtgatttaatgtaactgaatgtgtcagtgtcatgacagatactggaatatgttggacattccaatctga |
517 |
Q |
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| T |
17071305 |
acaatgacacaatattattaagaaaatagaagtgattgaatgtaactgaatgtgtcagtgtcgtgacagatactggaacatgttggacattccaatctga |
17071206 |
T |
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| Q |
518 |
agagacggggccacatgggcagaaagggatggacatagaattgaaatgacgcagtgatctggcattgtaaatcatgtctaatgatta |
604 |
Q |
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| T |
17071205 |
agtgtcggtgctacatgagcagaaagggatgaccatataattaaaatgatgccatgatctcgcattgtaaatcatgtctaatgatta |
17071119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 603 - 797
Target Start/End: Complemental strand, 17071085 - 17070891
Alignment:
| Q |
603 |
taaatttgaaatgcagaaaagttaaatcaagggctagaattaatcggcgttcgatggttctctaacagtagacttagtatataatcataatctgaagtta |
702 |
Q |
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| T |
17071085 |
taaatttgaaatgcagaaaagttaaatcaagggctagaattaatcggtgttcgatggttctctaacagtagacttagtatataatcataatttgaagtta |
17070986 |
T |
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| Q |
703 |
gcaaatcgtagcctctcatgttctcataaatgattgttaatgatgataagctgatgtttgttttaagatctcttttttatagtctttgatgatgt |
797 |
Q |
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| T |
17070985 |
gcaaaccgtagcctctcatgttctcataaatgattgttaatgatgataagctgatgtttgttttaagatctcttttttatagtctttgatgatgt |
17070891 |
T |
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