View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_10 (Length: 383)
Name: NF16216_low_10
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 10660695 - 10661054
Alignment:
| Q |
19 |
gatagcagtgaaatatatttcacacatgattcaaggaaggaaaatag------ctttgtgcttggttagtttatcaaataaatccacaaatcatttgcac |
112 |
Q |
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| T |
10660695 |
gatagcagtgaaatatatttcacacataattcaaggaaggaaaatagttaaccctttgtgcttggttagtttatcaaatacatccacaaatcatttgcac |
10660794 |
T |
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| Q |
113 |
atgaagcagagttcacaaaatatattgatttacattttcacaaactcatgattaaatccatccacaaatcatgcttcctcaacaaaattaccctccattc |
212 |
Q |
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| T |
10660795 |
atgaagcagacttcacaaaatatattgatttacattttcacaaactcatgattaaatccatccacaaatcatgcttcctcaacaaaattaccctccattc |
10660894 |
T |
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| Q |
213 |
ttcaaagaaattcctttatcttcagctgcaagaatgtacttaattggcattgaagctgtacattgaactggttagcaacaatatctacaaatttaattgc |
312 |
Q |
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| T |
10660895 |
ttcaaagaaattcctttatcttcagctgcaagaatgtacttaattggcattgaagctgtacattgaactggttagcaacaatatctacaaatttaattgc |
10660994 |
T |
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| Q |
313 |
taccgatgtgccgcttctcgaaagaaaaatcttttgaacttgaagttgtgccgatttcat |
372 |
Q |
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| T |
10660995 |
taccgatgtgtcgcttctcgaaagaaaaatcttttgaacttgaagttgtgccgatttcat |
10661054 |
T |
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