View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_12 (Length: 356)
Name: NF16216_low_12
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 37558899 - 37559251
Alignment:
| Q |
15 |
agcaatgttccaagcctcttgcagcggtgactagtgaagtatgtata---------------taaactataaaagtttgtgttataatgcaaaagtttgt |
99 |
Q |
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| T |
37558899 |
agcaatgttccaagcctcttgcagcagtgactagtgaagtatgtatataaactatatatatataaactataaaagtttgtgttataatgcaaaagcttgt |
37558998 |
T |
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| Q |
100 |
tggcaatttggcatggttaccaaattccttttgagaaaatctacctttctgttgaactacaaatagcatcaatgatcattgggactcctttaggaccact |
199 |
Q |
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| T |
37558999 |
tggcaatttggcatggttaccaaattccttttgagaaaatctacctttctgttgaactacaaatagcatcaatgatcaatgggactcctttaggaccact |
37559098 |
T |
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| Q |
200 |
ttcttaattttgagaagaaaaagtagtgtatgattatttatttgaaagattttt-------attttaagttgttgacaagttattaaaacactttgaaat |
292 |
Q |
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| T |
37559099 |
ttcttaattttgagaagaaaaagtagtgtatgattatttatttgaaagactttttgaaagatttttaagttgttgacaagttattaaaacactttgaaat |
37559198 |
T |
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| Q |
293 |
aaagtcaactcgatgctataaatcttcctgccttgattttacatgtacccttt |
345 |
Q |
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| T |
37559199 |
aaagtcaactcaatgctataaatcttcctgccttgattttacatgtacccttt |
37559251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 37558843 - 37558895
Alignment:
| Q |
18 |
aatgttccaagcctcttgcagcggtgactagtgaagtatgtatataaactata |
70 |
Q |
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| T |
37558843 |
aatggtccaagccttttgcactagtgactagtgaagtatgtatacaaactata |
37558895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 4444506 - 4444440
Alignment:
| Q |
64 |
aactataaaagtttgtgttataatgcaaaagtttgttggcaatttggcatggttaccaaattccttt |
130 |
Q |
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| T |
4444506 |
aactataaaggtttgttttataatgcaaaagtttgttggcaatttggcatgaataccaaattccttt |
4444440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 4444627 - 4444573
Alignment:
| Q |
15 |
agcaatgttccaagcctcttgcagcggtgactagtgaagtatgtatataaactata |
70 |
Q |
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| T |
4444627 |
agcaatgttccaagcttcttgcagtagtgacta-tgaagtatatatataaactata |
4444573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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