View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_13 (Length: 341)
Name: NF16216_low_13
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 6744460 - 6744143
Alignment:
| Q |
10 |
aggagcagagaaacgaatgatgagttcatgggagaaagnnnnnnnngagtaacatcatggtttacactccaacattttttagtgactcacaactttgtct |
109 |
Q |
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|||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6744460 |
aggaacagagaaatgaatgatgagttcatgggagaaa-aaaaaatagagtaacatcatggtttacactccaacattttatagtgactcacaactttgtct |
6744362 |
T |
|
| Q |
110 |
tgtgttgcaacacagttctctcgattttgaaacaacaaaaacatgatattattgaccattggactgatatgcatcaaataaactatgccttagattcaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6744361 |
tgtgttgcaacacagttctctcgattttgaaacaaccaaaacatgatattattgaccattggactgatatgcatcaaataaactatgccttagattcaca |
6744262 |
T |
|
| Q |
210 |
ttattcctttcaaagaggaaaatcc-agaacataatatatctaaaacacattaccagataaaaataataatcaagctgcatattttattccttctaaatc |
308 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6744261 |
ttattcctttcaaagaggaaaatccaagaacataatatatctaaaacaaattaccggataaaaataataatcaagctgcatattttattccttctaaatc |
6744162 |
T |
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| Q |
309 |
tctcacatgacagtactga |
327 |
Q |
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||||||||||||||||||| |
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| T |
6744161 |
tctcacatgacagtactga |
6744143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 327
Target Start/End: Complemental strand, 4433859 - 4433538
Alignment:
| Q |
10 |
aggagcagagaaacgaatgatgagttcatgggagaaagnnnnnnnngag--taacatcatggtttacactccaacattttttagtgactcacaactttgt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
4433859 |
aggaacagagaaacgaatgatgagttcatgggagaaaaaaaaaatagagagtaacatcatggtttacactccaacattttatagtgagtcacaactttgt |
4433760 |
T |
|
| Q |
108 |
cttgtgttgcaacacagttctctcgattttgaaacaacaaaaacatgatattattg--accattggactgatatgcatcaaataaactatgccttagatt |
205 |
Q |
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||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433759 |
cttgtgttgcaacacagttctctcgattttgcaacaaccaaaacatgatattattgtaaccattggactgatatgcatcaaataaactatgccttagatt |
4433660 |
T |
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| Q |
206 |
cacattattcctttcaaagaggaaaatccagaacataatatatctaaaacacattaccagataaaaataataatcaagctgcatattttattccttctaa |
305 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4433659 |
cacattattcctttcaaagaggaagatccagaacataatatatctaaaacaaattaccggataaaaataataatcaagctgcatattttattccttctaa |
4433560 |
T |
|
| Q |
306 |
atctctcacatgacagtactga |
327 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4433559 |
atctctcacatgacagtactga |
4433538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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