View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_15 (Length: 297)
Name: NF16216_low_15
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 71 - 292
Target Start/End: Original strand, 1390738 - 1390959
Alignment:
| Q |
71 |
aaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcatt |
170 |
Q |
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| T |
1390738 |
aaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcatt |
1390837 |
T |
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| Q |
171 |
ctcaaattagtattctctattctttttatatcgtaaatttgattgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagt |
270 |
Q |
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| T |
1390838 |
ctcaaattagtattatctattctttttatatcgtaaatttgtttgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagt |
1390937 |
T |
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| Q |
271 |
gctaaactgcacctatgcttct |
292 |
Q |
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| T |
1390938 |
gctaaactgcacctatgcttct |
1390959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 1374478 - 1374572
Alignment:
| Q |
105 |
ctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagtattctctattctttttat |
199 |
Q |
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| T |
1374478 |
ctttcggattttaaaatgcaaatggatggataagagttgataaatgaaatggcacttctattgattctcaaattaatattatctattgtttttat |
1374572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 1358869 - 1358946
Alignment:
| Q |
104 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
182 |
Q |
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| T |
1358869 |
gctttcggatttc-aaatgcaaatgtatggataagagttaataaatgaaatggtacttttattcattctgaaattagta |
1358946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 1350995 - 1351072
Alignment:
| Q |
104 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
182 |
Q |
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| T |
1350995 |
gctttcggatttcaaaatgcaaatgtatggataagagttaataaatgaaatggtaccttt-ttcattctcaagttagta |
1351072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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