View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16216_low_17 (Length: 250)
Name: NF16216_low_17
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 31316596 - 31316831
Alignment:
| Q |
1 |
aaaatatctgatttgggtgagagaatgtggtagaaaagtgtggaaacnnnnnnn-ggatattttgtcttatatataccccacttaggggaaatgaccatt |
99 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31316596 |
aaaatatctgatttgggtgagagaatggggtagaaaagtgtggaaactttattttggatattttgtcttatatataccccacttaggggaaatgaccatt |
31316695 |
T |
|
| Q |
100 |
ttacccctttttggtcttcttaacttaatttatctgatnnnnnnnntaccgtgaaaactttaagccgcatatttcattccccgtaatccgttgtaatcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31316696 |
ttacccctttttggtcttcttaacttaatttatctgataaaaaaaataccgtcaaaactttaagcggcatatttcattccccgtaatccgttgtaatcat |
31316795 |
T |
|
| Q |
200 |
ataattcgatcatgaaaagtcttacttgcaattact |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
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|
| T |
31316796 |
ataattcggtcatgaaaagtcttacttgcaattact |
31316831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 31330270 - 31330067
Alignment:
| Q |
12 |
tttgggtgagagaatgtggtagaaaagtgtggaaacnnnnnnnggatattttgtcttatatataccccacttaggggaaatgaccattttaccccttttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
31330270 |
tttgggtgagagaatgtggtagaaaagtgtggaaactttttt-ggatattttgtcttatatataccccacttatgggaaatgaccattttaccccttcta |
31330172 |
T |
|
| Q |
112 |
ggtcttcttaacttaatttatctgatnnnnnnnntaccgtgaaaactttaagccgcatatttcattccccgtaatccgttgtaatcatataattcgatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31330171 |
ggtcttcttaacttaatttatctgataaaaaaaatactgtaaaaactttaagcggcatatttcattctccgtaatccgttgtaatcatataattcgatca |
31330072 |
T |
|
| Q |
212 |
tgaaa |
216 |
Q |
| |
|
||||| |
|
|
| T |
31330071 |
tgaaa |
31330067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 31336991 - 31336788
Alignment:
| Q |
12 |
tttgggtgagagaatgtggtagaaaagtgtggaaacnnnnnnnggatattttgtcttatatataccccacttaggggaaatgaccattttaccccttttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
31336991 |
tttgggtgagagaatgtggtagaaaagtgtggaaactttttt-ggatattttgtcttatatataccccacttatgggaaatgaccattttaccccttcta |
31336893 |
T |
|
| Q |
112 |
ggtcttcttaacttaatttatctgatnnnnnnnntaccgtgaaaactttaagccgcatatttcattccccgtaatccgttgtaatcatataattcgatca |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31336892 |
ggtcttcttaacttaatttatctgataaaaaaaatactgtaaaaactttaagcggcatatttcattctccgtaatccgttgtaatcatataattcgatca |
31336793 |
T |
|
| Q |
212 |
tgaaa |
216 |
Q |
| |
|
||||| |
|
|
| T |
31336792 |
tgaaa |
31336788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 31662392 - 31662169
Alignment:
| Q |
12 |
tttgggtgagagaatgtggtagaaaagtgtggaaacnnnnnnnggatattttgtcttatatatacccc-acttaggggaaatgaccattttacccctttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31662392 |
tttgggtgagagaatgtggtagaaaagtgtggaaactttttt-ggatattttgtcttatatatacccccacttaggggaaatgaccattttacccctttt |
31662294 |
T |
|
| Q |
111 |
tggtcttcttaacttaatttatctgatnnnnnnnntaccgtgaaaactttaagccgcatatttcattccccgtaatccgttgtaatcatataattcgatc |
210 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
31662293 |
aggtcttcttaacttaatttatatgataaaaaaaataccgtaaaaactttaagcggcatatttcattccccgtaatccgttgtaatcatataattcggtc |
31662194 |
T |
|
| Q |
211 |
atgaaaagtcttacttgcaattact |
235 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
31662193 |
atgaaaagtcttactttcaattact |
31662169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 18113046 - 18113279
Alignment:
| Q |
1 |
aaaatatctgatttgggtgagagaatgtggtagaaaagtgtggaaacnnnnnnngg-atattttgtcttatatataccccacttaggggaaatgaccatt |
99 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
18113046 |
aaaaaatctgatttgggtaagagaatgtggtagaaaagtgtggaaacttttttttgtatattttgtcttatatataccccacttagggaaaatgaccatt |
18113145 |
T |
|
| Q |
100 |
ttacccctttttggtcttcttaacttaatttatctgatnnnnnnnntaccgtgaaaactttaagccgcatatttcattccccgtaatccgttgtaatcat |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
18113146 |
ttaccc-tttttggtcttcttaacttaatttatctgataaaaaaa-tacggtaaaaactttaagcggcatatttcattccccgtaatccgttgtaatcat |
18113243 |
T |
|
| Q |
200 |
ataattcgatcatgaaaagtcttacttgcaattact |
235 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |
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|
| T |
18113244 |
ataattcggtcatgaaaagtcttacttgcaattact |
18113279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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