View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_4 (Length: 682)
Name: NF16216_low_4
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 10 - 665
Target Start/End: Complemental strand, 52971408 - 52970749
Alignment:
| Q |
10 |
gagatgaagtgaaaatggtgatggaaaaaatgggannnnnnngcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971408 |
gagatgaagtgaaaatggtgatggaaaaaatgggatttttttgcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagt |
52971309 |
T |
|
| Q |
110 |
gtttgaagagaatgagcctagtttggtggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaaga |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971308 |
gtttgaagagaatgagcctagtttggaggagttgaagcaagcttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaaga |
52971209 |
T |
|
| Q |
210 |
gttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttca |
309 |
Q |
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| T |
52971208 |
gttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttca |
52971109 |
T |
|
| Q |
310 |
ttgagtttgtaaatattatgaaaaaccacttctgctgctaatctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagta |
409 |
Q |
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| T |
52971108 |
ttgagtttgtaaatattatgaaaaaccacttctgctgctgatctgtttgttgttcccttatttaagaaggatattcatataatataacataagcttagtt |
52971009 |
T |
|
| Q |
410 |
gatgtttgcatccacggtgatttttggcaaaattacgtgatttagttgaatat-nnnnnnntgttaattttgctcaatccaaccattaaaatgaattcat |
508 |
Q |
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| T |
52971008 |
gatgtttgcatccatggtgatttttggcaaaattacgtgatttagttgaatataaaaaaaatgttaattttgctcaatccaaccattaaaatgaattcat |
52970909 |
T |
|
| Q |
509 |
atgacaaat---ataaaccaacagatttctcaagaaaaacaaagaagcaagtacatgtttgacataagacacaatatttcacataactttaattaatacc |
605 |
Q |
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| T |
52970908 |
atgacaaatataataaaccaacagatttctcaagaaaaacaaagaagcaagtacatgtttgacataagacacgatatttcacataactttaattaatacc |
52970809 |
T |
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| Q |
606 |
gttcaatctatgttaagattattttaatcaatattctttgataagtagcacggtctcatg |
665 |
Q |
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| T |
52970808 |
gttcaatctatgttaagattattttaatcaatattctttgataagtagcactgtctcatg |
52970749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 161 - 304
Target Start/End: Complemental strand, 52967369 - 52967223
Alignment:
| Q |
161 |
ttttgatgagaacaaagatggttttatt-gatgcaaaggagttgcaaagagttcttgttatttt--gggattgaaacaaggatcagaatttgagaactgc |
257 |
Q |
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||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||| || |
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| T |
52967369 |
ttttgatgacaacaaagatggttttgtttgatgcataggagttgcaaagagttcttgctattttttggggttcaaacaaggatcagaatttgagaaatgt |
52967270 |
T |
|
| Q |
258 |
caaaagatgatcacaatttttgatgaaaatcaagatggaagaattga |
304 |
Q |
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|||||||| |||| | |||||||||||||||||||| ||||||||| |
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| T |
52967269 |
caaaagattatcaagaattttgatgaaaatcaagatgaaagaattga |
52967223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 52967467 - 52967393
Alignment:
| Q |
52 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcc |
127 |
Q |
| |
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||||||||| ||| ||| ||||||| |||||||| |||| |||||| |||||||||||||| | ||||||||||| |
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| T |
52967467 |
gcagctcagtaagtgagaaacttgagtaaaagtatagttc-aaggaggtttgtgaagtgttttaggagaatgagcc |
52967393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 52 - 334
Target Start/End: Original strand, 2855815 - 2856097
Alignment:
| Q |
52 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
151 |
Q |
| |
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||||||||||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
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| T |
2855815 |
gcagctcagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
2855914 |
T |
|
| Q |
152 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||| || |||| || ||| ||||| |
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| T |
2855915 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaaggttcggaagttgag |
2856014 |
T |
|
| Q |
252 |
aactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaa |
334 |
Q |
| |
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|| || || |||||||| | | |||||||| |||||||||||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
2856015 |
aattgtcagaagatgattaagaattttgatgcaaatcaagatggaagaattgatttcattgaatttgtaaaaattatggaaaa |
2856097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 2851720 - 2851900
Alignment:
| Q |
54 |
agctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagctt |
153 |
Q |
| |
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||||||||||| || |||||||||||||| |||||||| ||||||||| |||| ||||||| |||||||| || |||| | ||| ||||| ||| |
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| T |
2851720 |
agctcagaaagtgatgaacttgaagaaaaatatggttcaaaggagcttcttgaattgtttgatgagaatgaaccatgtttagaggaagtgaagatgactt |
2851819 |
T |
|
| Q |
154 |
ttg-------atgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggatt |
229 |
Q |
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||| ||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||| |
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| T |
2851820 |
ttgaatttttatggttttaatgagaacaaagatgg--ttattgatgcaatggagttgcaaagagttatgtgtattttgggatt |
2851900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 5e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 52 - 335
Target Start/End: Original strand, 10477734 - 10478017
Alignment:
| Q |
52 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
151 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |||||||| || || |||| |||| ||||||| ||||||||||| ||||||| ||| ||||| || |
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| T |
10477734 |
gcagctcagaaagtgatgaacttgatgaaaaatatggttcaaatgaactttctgaattgtttgatgagaatgagccaagtttggaggaagtgaagatggc |
10477833 |
T |
|
| Q |
152 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
251 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| |||| | |||| || || |
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| T |
10477834 |
ttttgacgtttttgatgagaacaaagatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaag |
10477933 |
T |
|
| Q |
252 |
aactgccaaaagatgatcacaatttttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaac |
335 |
Q |
| |
|
|| || || |||||||||| | |||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||| |
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|
| T |
10477934 |
aattgtcagaagatgatcaagaattttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaac |
10478017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 52 - 289
Target Start/End: Original strand, 8216104 - 8216341
Alignment:
| Q |
52 |
gcagctcagaaagcgaggaacttgaagaaaagtatggttccaaggagctttgtgaagtgtttgaagagaatgagcctagtttggtggagttgaagcaagc |
151 |
Q |
| |
|
|||||| |||||| || |||||||||||||| ||| |||| |||||| ||| |||| ||||||| ||||||||||| ||||||| ||| | || || |
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| T |
8216104 |
gcagcttagaaagtgatgaacttgaagaaaaatatagttcgaaggagttttctgaattgtttgatgagaatgagccaagtttggaggaagtttagatggc |
8216203 |
T |
|
| Q |
152 |
ttttgatgtttttgatgagaacaaagatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgag |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||| | |||||||||||| || |||| |||||| ||||| |
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|
| T |
8216204 |
ttttgatgtttttgatgagaacaaagatggttttattgattcaatggagttgaaaaatgttatgtgtattttgggatttaaggaaggttcagaagttgag |
8216303 |
T |
|
| Q |
252 |
aactgccaaaagatgatcacaatttttgatgaaaatca |
289 |
Q |
| |
|
|| || || |||||||| | | |||||||| |||||| |
|
|
| T |
8216304 |
aattgtcagaagatgattaagaattttgatgcaaatca |
8216341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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