View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16216_low_6 (Length: 562)

Name: NF16216_low_6
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16216_low_6
NF16216_low_6
[»] chr4 (31 HSPs)
chr4 (123-554)||(32594018-32594447)
chr4 (126-275)||(34859040-34859189)
chr4 (123-257)||(9455335-9455469)
chr4 (124-275)||(1705187-1705337)
chr4 (123-260)||(44341168-44341305)
chr4 (123-257)||(20034296-20034430)
chr4 (150-276)||(43286241-43286367)
chr4 (120-247)||(17543719-17543847)
chr4 (121-257)||(47295537-47295673)
chr4 (123-290)||(951348-951515)
chr4 (150-257)||(32767583-32767690)
chr4 (123-257)||(39345806-39345941)
chr4 (123-257)||(27869997-27870131)
chr4 (123-257)||(45522475-45522609)
chr4 (150-276)||(52464075-52464201)
chr4 (123-257)||(54134490-54134624)
chr4 (123-247)||(2323804-2323928)
chr4 (123-233)||(19240744-19240854)
chr4 (123-276)||(51401321-51401474)
chr4 (152-234)||(3415234-3415316)
chr4 (123-284)||(41361232-41361393)
chr4 (123-222)||(54787553-54787652)
chr4 (155-278)||(1324915-1325028)
chr4 (153-291)||(50004741-50004878)
chr4 (123-254)||(34030272-34030402)
chr4 (121-214)||(7138512-7138604)
chr4 (463-511)||(32774900-32774948)
chr4 (201-255)||(16029783-16029837)
chr4 (123-182)||(16029724-16029783)
chr4 (325-367)||(32774859-32774901)
chr4 (203-257)||(51031694-51031748)
[»] chr8 (14 HSPs)
chr8 (123-554)||(2349667-2350088)
chr8 (126-275)||(28968170-28968319)
chr8 (121-257)||(15243745-15243881)
chr8 (150-276)||(42739341-42739467)
chr8 (123-257)||(30436462-30436597)
chr8 (123-257)||(35813431-35813566)
chr8 (123-247)||(3654313-3654437)
chr8 (123-284)||(9201084-9201244)
chr8 (122-264)||(6142867-6143010)
chr8 (127-257)||(45451767-45451890)
chr8 (123-222)||(19293588-19293687)
chr8 (160-246)||(3940681-3940767)
chr8 (123-245)||(29894474-29894596)
chr8 (123-275)||(40633337-40633488)
[»] chr2 (21 HSPs)
chr2 (314-554)||(20922468-20922709)
chr2 (123-278)||(20922744-20922899)
chr2 (150-290)||(5271073-5271213)
chr2 (123-276)||(9470798-9470951)
chr2 (123-253)||(42730724-42730853)
chr2 (123-257)||(21747391-21747525)
chr2 (123-257)||(25096278-25096412)
chr2 (121-257)||(15560571-15560707)
chr2 (123-257)||(29201411-29201545)
chr2 (120-248)||(17920758-17920886)
chr2 (122-257)||(40000792-40000926)
chr2 (152-253)||(15614158-15614259)
chr2 (123-243)||(26556501-26556622)
chr2 (150-255)||(38838045-38838150)
chr2 (120-215)||(17088259-17088355)
chr2 (149-215)||(17077332-17077398)
chr2 (146-215)||(17071260-17071329)
chr2 (161-257)||(40861040-40861136)
chr2 (169-256)||(4564938-4565024)
chr2 (120-214)||(4471014-4471108)
chr2 (123-189)||(12465985-12466051)
[»] chr7 (22 HSPs)
chr7 (314-554)||(19105934-19106161)
chr7 (122-273)||(41200196-41200347)
chr7 (120-249)||(7505208-7505337)
chr7 (123-276)||(49112512-49112665)
chr7 (122-257)||(23025135-23025270)
chr7 (123-257)||(1873610-1873744)
chr7 (152-276)||(47381459-47381583)
chr7 (122-257)||(39494044-39494180)
chr7 (122-245)||(31272129-31272252)
chr7 (117-257)||(16526156-16526296)
chr7 (155-291)||(17511268-17511404)
chr7 (155-291)||(17541810-17541946)
chr7 (123-260)||(35709867-35710004)
chr7 (153-270)||(33604559-33604676)
chr7 (176-276)||(4266886-4266986)
chr7 (162-276)||(2621419-2621533)
chr7 (175-257)||(17475737-17475819)
chr7 (175-257)||(17577395-17577477)
chr7 (152-247)||(10993189-10993285)
chr7 (121-255)||(19105787-19105913)
chr7 (123-162)||(22791912-22791951)
chr7 (219-248)||(31271521-31271550)
[»] chr1 (22 HSPs)
chr1 (17-122)||(5905688-5905793)
chr1 (123-276)||(48470408-48470561)
chr1 (122-278)||(32057529-32057685)
chr1 (122-275)||(45565733-45565886)
chr1 (121-257)||(43781167-43781303)
chr1 (122-257)||(33188999-33189134)
chr1 (123-274)||(49229146-49229296)
chr1 (123-257)||(9660823-9660957)
chr1 (162-276)||(46237575-46237689)
chr1 (121-257)||(12745549-12745686)
chr1 (121-257)||(12756538-12756675)
chr1 (123-257)||(42763249-42763383)
chr1 (126-275)||(6501582-6501735)
chr1 (123-257)||(45757238-45757372)
chr1 (152-276)||(4220887-4221010)
chr1 (123-257)||(47188564-47188695)
chr1 (120-249)||(31489509-31489638)
chr1 (167-257)||(17331280-17331370)
chr1 (122-162)||(33815043-33815083)
chr1 (122-162)||(33874513-33874553)
chr1 (203-257)||(45039032-45039086)
chr1 (121-242)||(30533365-30533486)
[»] chr6 (14 HSPs)
chr6 (123-276)||(20139188-20139341)
chr6 (123-276)||(22193528-22193681)
chr6 (121-240)||(12272224-12272343)
chr6 (151-275)||(3044281-3044405)
chr6 (123-257)||(15065901-15066035)
chr6 (150-257)||(31472487-31472594)
chr6 (123-257)||(10997714-10997848)
chr6 (122-247)||(27966762-27966887)
chr6 (123-283)||(31655503-31655663)
chr6 (160-273)||(12076625-12076737)
chr6 (123-257)||(11369577-11369712)
chr6 (171-248)||(17869271-17869348)
chr6 (171-238)||(17879033-17879100)
chr6 (129-257)||(32465648-32465776)
[»] scaffold0295 (2 HSPs)
scaffold0295 (123-273)||(6139-6290)
scaffold0295 (123-217)||(3654-3749)
[»] chr3 (16 HSPs)
chr3 (123-290)||(6888689-6888856)
chr3 (120-290)||(43735955-43736124)
chr3 (123-257)||(21075886-21076020)
chr3 (122-257)||(43746281-43746417)
chr3 (152-272)||(33982994-33983114)
chr3 (121-264)||(42854284-42854427)
chr3 (123-257)||(46311832-46311966)
chr3 (122-245)||(19975753-19975876)
chr3 (160-276)||(27969483-27969599)
chr3 (123-257)||(46219071-46219206)
chr3 (123-276)||(50737922-50738075)
chr3 (123-275)||(50774779-50774931)
chr3 (123-284)||(2868979-2869140)
chr3 (149-257)||(27877526-27877634)
chr3 (125-283)||(26844487-26844645)
chr3 (150-233)||(24310802-24310885)
[»] chr5 (28 HSPs)
chr5 (152-278)||(33908103-33908229)
chr5 (123-257)||(6955787-6955921)
chr5 (120-290)||(10642008-10642178)
chr5 (123-257)||(20338504-20338638)
chr5 (123-257)||(21731688-21731822)
chr5 (123-257)||(35038748-35038882)
chr5 (122-257)||(6238155-6238291)
chr5 (122-257)||(35838080-35838216)
chr5 (123-257)||(6899866-6900001)
chr5 (123-257)||(38356021-38356155)
chr5 (123-257)||(24477257-24477392)
chr5 (150-257)||(38976244-38976351)
chr5 (123-276)||(3436697-3436849)
chr5 (126-257)||(4699925-4700057)
chr5 (123-255)||(37206036-37206168)
chr5 (122-257)||(42860311-42860446)
chr5 (123-245)||(40917914-40918036)
chr5 (153-272)||(17085400-17085519)
chr5 (152-257)||(9996243-9996348)
chr5 (123-257)||(6452985-6453120)
chr5 (123-257)||(36016253-36016379)
chr5 (123-248)||(38986610-38986735)
chr5 (162-260)||(31230266-31230364)
chr5 (197-257)||(3296166-3296226)
chr5 (123-213)||(74953-75043)
chr5 (193-250)||(36866160-36866217)
chr5 (123-175)||(1845416-1845468)
chr5 (173-257)||(4975792-4975876)
[»] scaffold0219 (1 HSPs)
scaffold0219 (122-257)||(16635-16770)
[»] scaffold1449 (1 HSPs)
scaffold1449 (120-215)||(1585-1680)
[»] scaffold0007 (1 HSPs)
scaffold0007 (121-158)||(56193-56230)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 123 - 554
Target Start/End: Original strand, 32594018 - 32594447
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| ||||| | |||||||||||||||||||||||||||| |    
T  32594018 tagagctgtcaaaatgggccgggccgtacgggccggcccgaaagcccgaataaaatgtaggacctggaccgaataattgcagcccgaattttttcagggc 32594117  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaaataccaannnnnnnnnnnnnnnngtgtggtct 322  Q
    |||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||                |||||||||    
T  32594118 tttttaacccgacccgaaaaagcccgtagcccgttcaagctacgggcagcccgccagcccgccaaaaaataccaatttttttgtttttt--gtgtggtct 32594215  T
Q  323 gttatgataaaacccatgtatcacgaagcataggaacaattaggagcttcgaagttacacaggaagttgaattgtgttaggtttctttctccattttatc 422  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32594216 gttatgataaaacccatgtatcacgaagcataggaacaattaggagcttcgaagttacacaggaagttgaattgtgttaggtttctttctccattttatc 32594315  T
Q  423 gattcattttatagatgataattttgttacatagaagatagaacatatatctgatattgtcaatactaaactccaatttagatgtttaatatttaagcgg 522  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32594316 gattcattttatagatgataattttgttacatagaagatagaacctatatctgatattgtcaatactaaactccaatttagatgtttaatatttgagcgg 32594415  T
Q  523 cagcacatacttcttcctttactgatgatgtc 554  Q
    ||||||||||||||||||||||| ||||||||    
T  32594416 cagcacatacttcttcctttacttatgatgtc 32594447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 126 - 275
Target Start/End: Complemental strand, 34859189 - 34859040
Alignment:
Q  126 agctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggacttt 225  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| | |||| ||||||||||||| ||||    
T  34859189 agctgtcaaaataggccgggccgtacgggtcggtccgaaaacccgaataaaatgcagggcctgggccgaataatagaagcctgaattttttcagggcttt 34859090  T
Q  226 ttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||||| ||||||||||||||||||| || ||  ||||||||||    
T  34859089 ttagcccggcccaaaaaagcccgtagcccgttagggctgagggcagcccg 34859040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 9455469 - 9455335
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| | |  ||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  9455469 tagagctgtcaaaatgggccggacaatacgggccggtccgaaagcccgaataaaatgtagggactggactgaataattgcagcccgaattttttcagggc 9455370  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||  |||||||||||| ||||||||||||    
T  9455369 tttttagctgggcccgaaaaaggccgtagcccgtt 9455335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 1705337 - 1705187
Alignment:
Q  124 agagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggact 223  Q
    ||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||| |||| ||||||  |||||| ||||||||||| |||||||| ||    
T  1705337 agagctgtcaaaatgggtcgggccgtacgggccggcccgaaagcccgaataaaatgcagggtctgggccaaataatagcagcccgaat-ttttcagggct 1705239  T
Q  224 ttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||||||||||||||| |||||||||||||| ||  ||||||||||    
T  1705238 ttttagcccggcccgaaaaagctcgtagcccgttcgggctgagggcagcccg 1705187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 44341168 - 44341305
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||| ||| ||| || |||| |    
T  44341168 tagagctgtcaaaacgggccgggccatacgggccggtccgaaagcccgaataaaatgtagggcttgggccgaataattgcagtccggattcttccagggc 44341267  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcgg 260  Q
    |||||||||||||||| ||||||||||| ||| |||||    
T  44341268 tttttagcccggcccgtaaaagcccgtaaccctttcgg 44341305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 20034430 - 20034296
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  20034430 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 20034331  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  20034330 tttttagcccggcccgtaaaagcccttggcccgtt 20034296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 43286367 - 43286241
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    |||||| || |||| | ||||||||||| ||||||| |||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  43286367 acgggctggcccgagagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaaaaagcccgg 43286268  T
Q  250 agcccgttcggactacgggcagcccgc 276  Q
    |||||||| || | |||||||||||||    
T  43286267 agcccgttagggccacgggcagcccgc 43286241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 17543719 - 17543847
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-a 218  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |    
T  17543719 aactagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaaga 17543818  T
Q  219 ggactttttagcccggcccgaaaaagccc 247  Q
    || ||||||||||||||||| ||||||||    
T  17543819 gggctttttagcccggcccgtaaaagccc 17543847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 47295537 - 47295673
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||| | ||||||||| |||||||| ||    |||    
T  47295537 actagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttggaccgaataattggagcccgaaattgaagagg 47295636  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||||| |||||||| | |||||||    
T  47295637 gctttttagcccggcccgtaaaagcccttggcccgtt 47295673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 951348 - 951515
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||| ||| ||||| |||||| || |||||||| ||    ||| |    
T  951348 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtaaggcttgggccgaataagtggagcccgaaattgaagagggc 951447  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaa 290  Q
    |||||||||||||||| |||||||| | |||||| ||| || ||||| |||||  ||||||| |||||    
T  951448 tttttagcccggcccgtaaaagcccttggcccgtccgggctccgggctgcccggaagcccgcaaaaaa 951515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 32767583 - 32767690
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| |||||||||||| |||||| |||||  |||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  32767583 acgggccggcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccgaaaaagcccgg 32767682  T
Q  250 agcccgtt 257  Q
    | ||||||    
T  32767683 aacccgtt 32767690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 39345806 - 39345941
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||     
T  39345806 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaataggg 39345905  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  39345906 ctttttagcccggcccgtaaaagcccttggcccgtt 39345941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 27869997 - 27870131
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| |||||  |||||||| |||||||| ||    ||| |    
T  27869997 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccaaataattggagcccgaaattgaagagggc 27870096  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  27870097 tttttagcccggcccgtaaaagcccttggcccgtt 27870131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 45522475 - 45522609
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||  |    
T  45522475 tagagctgtcaaaatgggtcgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagagc 45522574  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  45522575 tttttagcccggcccgtaaaagcccttggcccgtt 45522609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 52464201 - 52464075
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||  ||||||| ||||||||||||||  ||  |||||||||||||| ||||||||||||     
T  52464201 acgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattacagcccgaatttttcaagagctttttagcccggctcgaaaaagcccgg 52464102  T
Q  250 agcccgttcggactacgggcagcccgc 276  Q
    || |||||||| | |||||||||||||    
T  52464101 agtccgttcgggccacgggcagcccgc 52464075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 54134624 - 54134490
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||| ||| |||||| ||||||||||||||||||| ||||| ||||||||| ||||| || ||    ||| |    
T  54134624 tagagctgtcaaaatgggccgggccgtaagggtcggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggc 54134525  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  54134524 tttttagcccggcccgtaaaagcccttggcccgtt 54134490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 2323928 - 2323804
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| || |||| | |||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  2323928 tagagctgtcaaaatgggccgggccgtaaggaccgggctgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 2323829  T
Q  223 tttttagcccggcccgaaaaagccc 247  Q
    |||||||||||||||| ||||||||    
T  2323828 tttttagcccggcccgtaaaagccc 2323804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 233
Target Start/End: Original strand, 19240744 - 19240854
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| || | || || |||| |||||| ||||||||||||||||||  |||||  ||||||||||||||||||||||||||| |    
T  19240744 tagagctgtcaaaacgggccgggtcatatggaccggcccgaaagcccgaataaaatgtagggtttgggcctaataattgcagcccgaattttttcagggc 19240843  T
Q  223 tttttagcccg 233  Q
     ||||||||||    
T  19240844 attttagcccg 19240854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 51401474 - 51401321
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||||||| ||  || | ||||||| |||  | ||||| |||||  |||||  |||||| || |||| |||||||||||||| |||  |    
T  51401474 tagagctgtcaaaatgggctagttcgaatgggccggcccgttagcccgagtaaaacttagggtttgggctcaaaaattccagcccgaatttttccagagc 51401375  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    ||||||||||||||||||||| |||| | |||| |||| ||| |||||||||||    
T  51401374 tttttagcccggcccgaaaaaacccgcaacccgctcgggctaagggcagcccgc 51401321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 3415316 - 3415234
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccgg 234  Q
    ||||||| |||||| ||||||||||| ||||||| |||||  |||||||| ||||||||||||| |||| |||||||||||||    
T  3415316 gggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccgg 3415234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 41361232 - 41361393
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| |||| || |  || ||||||| |||||| ||||||||||| | | ||| |||||  || |||||||||||| |||||  |||| |    
T  41361232 tagagctgtcaaaacgggctagcctatatgggccggcccgaaagcccgaataaaacgcatggcttgggcctaaaaattgcagcccgtattttagcagggc 41361331  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgc 284  Q
    ||||||||||  ||| ||||| |||| | ||||| ||||||||||| |||| | ||||||||    
T  41361332 tttttagcccaacccaaaaaatcccgcaacccgtacggactacgggtagcctggcagcccgc 41361393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 54787652 - 54787553
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||||  ||||||||||||||| |||||||||| ||||||| ||| ||  ||| |    |||||||||||||||||||||||||||    
T  54787652 tagagttgtcaaaatgggctgggccgtacgggccggcccgaaaaccctaataaaacgtatggtttggaccttttaattgcagcccgaattttttcaggac 54787553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 1325028 - 1324915
Alignment:
Q  155 ccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagccc 254  Q
    |||| ||||||  |||||||||||||| ||| ||||||||| ||||  ||||||||||||| |||| |||||||||||          |||||||| |||    
T  1325028 ccggaccgaaagtccgaataaaatgtaaggcttgggctgaaaaattagagcccgaatttttccagggctttttagccc----------agcccgtaaccc 1324939  T
Q  255 gttcggactacgggcagcccgcca 278  Q
    |||||| |||||||||||||||||    
T  1324938 gttcgggctacgggcagcccgcca 1324915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 291
Target Start/End: Original strand, 50004741 - 50004878
Alignment:
Q  153 ggccggtccgaaaacccgaataaaatgtagggcctgggctg-aataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    |||||| ||| || || |||| ||||||||||||||||| | || ||| ||||||||||  |||||||| |||||||||| | |||||||| ||||  ||    
T  50004741 ggccggcccggaagcctgaattaaatgtagggcctgggccgaaaaaatagcagcccgaa--ttttcagggctttttagcctgccccgaaaaggcccacag 50004838  T
Q  252 cccgttcggactacgggcagcccgccagcccgccaaaaaa 291  Q
    |||| |||| ||| |||||||||| ||||| || ||||||    
T  50004839 cccgctcgggctaagggcagcccggcagcctgcaaaaaaa 50004878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 254
Target Start/End: Original strand, 34030272 - 34030402
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||  |||| | ||||||||||||  |||||| |||||| |||| ||||||| |||||  || ||| |||||| ||||||   |||| |    
T  34030272 tagagctgtcaaaacaggccggtccgtacgggccgacccgaaagcccgaa-aaaacgtagggcttgggcctaaaaatggcagcctgaatttaaacagggc 34030370  T
Q  223 tttttagcccggcccgaaaaagcccgtagccc 254  Q
    ||||| |||||||||| ||||||||| |||||    
T  34030371 tttttggcccggcccgtaaaagcccgaagccc 34030402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 7138604 - 7138512
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttt 214  Q
    |||||||| |||||||||| || | |||||||||||| |||||||  |||| ||||||||| ||  ||||| ||||||||||||||| ||||||    
T  7138604 actagagccgtcaaaatgg-ccggaccgtacgggccgatccgaaagtccgattaaaatgtaaggtttgggccgaataattgcagcccaaatttt 7138512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 32774900 - 32774948
Alignment:
Q  463 gaacatatatctgatattgtcaatactaaactccaatttagatgtttaa 511  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||    
T  32774900 gaacctatatctgatattgtcaataataaactccaatttggatgtttaa 32774948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 16029783 - 16029837
Alignment:
Q  201 gcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccg 255  Q
    |||||| ||||||||||||| |||||||||||||||| |||||||| | ||||||    
T  16029783 gcagcctgaattttttcagggctttttagcccggcccaaaaaagccggcagcccg 16029837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 16029724 - 16029783
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtag 182  Q
    |||||||||||||||| | | |||| |||||||| | |||||| ||||||||||||||||    
T  16029724 tagagctgtcaaaatgagtcgggccttacgggccagcccgaaagcccgaataaaatgtag 16029783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 32774859 - 32774901
Alignment:
Q  325 tatgataaaacccatgtatcacgaagcataggaacaattagga 367  Q
    |||||| |||||||||||| || ||||||||||||||||||||    
T  32774859 tatgatgaaacccatgtattacaaagcataggaacaattagga 32774901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 51031694 - 51031748
Alignment:
Q  203 agcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||   |||||||||||||||||||||  |||||||| ||||||||    
T  51031694 agcccgaattttaataggactttttagcccggcccgctaaagcccgaagcccgtt 51031748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 123 - 554
Target Start/End: Original strand, 2349667 - 2350088
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| || |||||||||| | |||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |    
T  2349667 tagagctgtcaaaatgggccgggtcgtacgggccagcccgaaagcccgaataaaatgtagggcctgggccgaataattgcagctcgaattttt-cagggc 2349765  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaaataccaannnnnnnnnnnnnnnngtgtggtct 322  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||                |||||||||    
T  2349766 tttttagcccggcccaaaaaagcccgtagcccgttcaggctacgggcagcccgccagcccgccaaaaaataccaattttttttgtttttttgtgtggtct 2349865  T
Q  323 gttatgataaaacccatgtatcacgaagcataggaacaattaggagcttcgaagttacacaggaagttgaattgtgttaggtttctttctccattttatc 422  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||             
T  2349866 gttatgataaaacccatgtatcacaaagcataggaacaattaggagcttcgaagttacactggaagtttaattgtgttaggtttctttctc--------- 2349956  T
Q  423 gattcattttatagatgataattttgttac----atagaagatagaacatatatctgatattgtcaatactaaactccaatttagatgtttaatatttaa 518  Q
        ||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2349957 ----cattttatagatgataattttgttacatatatagaagatagaacctatatctgatattgtcaatactaaactccaatttagatgtttaatatttga 2350052  T
Q  519 gcggcagcacatacttcttcctttactgatgatgtc 554  Q
    ||||||||||||||||||||||||||| ||||||||    
T  2350053 gcggcagcacatacttcttcctttacttatgatgtc 2350088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 28968170 - 28968319
Alignment:
Q  126 agctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggacttt 225  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| | |||| ||||||||||||| ||||    
T  28968170 agctgtcaaaataggccgggccgtacgggtcggtccgaaaacccgaataaaatgcagggcctgggccgaataatagaagcctgaattttttcagggcttt 28968269  T
Q  226 ttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||||| ||||||||||||||||||| || ||  ||||||||||    
T  28968270 ttagcccggcccaaaaaagcccgtagcccgttagggctgagggcagcccg 28968319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 15243745 - 15243881
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||| ||||||||||||| | ||||||| ||||||| |||||| || || ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  15243745 actagaactgtcaaaatgggtcgggccgtatgggccggcccgaaagcctgagtaaaatgtagggcctgggccgaataattgcagcccgaattctttcagg 15243844  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||| |||  |||||||||||||||||    
T  15243845 gctttttagcccggaccgttaaagcccgtagcccgtt 15243881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 150 - 276
Target Start/End: Complemental strand, 42739467 - 42739341
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||     
T  42739467 acgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccggcccaaaaaagcccgg 42739368  T
Q  250 agcccgttcggactacgggcagcccgc 276  Q
    ||||||||||| | |||||||||||||    
T  42739367 agcccgttcgggccacgggcagcccgc 42739341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 30436597 - 30436462
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||     
T  30436597 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagaggg 30436498  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  30436497 ctttttagcccggcccgtaaaagcccttggcccgtt 30436462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 35813566 - 35813431
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||     
T  35813566 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagaggg 35813467  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  35813466 ctttttagcccggcccgtaaaagcccttggcccgtt 35813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 3654437 - 3654313
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  3654437 tagagctgtcaaaataggccgggccgtaagggccggtccaaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 3654338  T
Q  223 tttttagcccggcccgaaaaagccc 247  Q
    |||||||| ||||||| ||||||||    
T  3654337 tttttagctcggcccgtaaaagccc 3654313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 9201084 - 9201244
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||| ||||| |||| || || |||| ||||||  |||||||||| ||||||  ||||| |||||||||||||| ||||| ||||||  |    
T  9201084 tagagttgtcaaaacgggcc-ggccatatggaccggcccgaaagtccgaataaaacgtagggtttgggccgaataattgcagcctgaattctttcagagc 9201182  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgc 284  Q
    |||||||||||| ||  ||||||||||| ||| ||||| ||| ||||||||||  |||||||    
T  9201183 tttttagcccggtccataaaagcccgtaaccctttcgggctaagggcagcccgaaagcccgc 9201244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 264
Target Start/End: Original strand, 6142867 - 6143010
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaac-ccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    ||||||||||||||||||  | |||| |||||||||| |||||||  || ||||||| |||||   | ||| |||||||||||||||| ||| || ||||    
T  6142867 ctagagctgtcaaaatggatcgggccatacgggccggaccgaaaagtccaaataaaacgtaggatttaggccgaataattgcagcccggattcttccagg 6142966  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgttcggacta 264  Q
     ||||||||||||||||| |||| |||||| ||| |||||||||    
T  6142967 gctttttagcccggcccgtaaaaacccgtaaccctttcggacta 6143010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 257
Target Start/End: Complemental strand, 45451890 - 45451767
Alignment:
Q  127 gctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttt-ttcaggacttt 225  Q
    |||||||||||||||| |||||||||||||||        ||||||||||||||||||| || || ||||||||||||| ||||||||    ||||||||    
T  45451890 gctgtcaaaatgggccgggccgtacgggccgg--------cccgaataaaatgtagggcttgagccgaataattgcagctcgaattttgaagaggacttt 45451799  T
Q  226 ttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||| || |||| |||||| ||||||    
T  45451798 ttagcccggctcgtaaaaacccgtaacccgtt 45451767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 19293687 - 19293588
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||||  ||||||||||||||| |||||||||| ||||||| ||| ||  ||| |    |||||||||||||||||||||||||||    
T  19293687 tagagttgtcaaaatgggctgggccgtacgggccggcccgaaaaccctaataaaacgtatggtttggaccttttaattgcagcccgaattttttcaggac 19293588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 3940681 - 3940767
Alignment:
Q  160 ccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcc 246  Q
    |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| ||||||||||||||||| |||||||    
T  3940681 ccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcc 3940767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 29894596 - 29894474
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||| |||||||||| | || || | ||||||| || ||| ||||||||||| ||||| | ||| |  || |||||||||||||||   |||||||     
T  29894596 tagagctatcaaaatgggtcgggtcgaatgggccggcccaaaagcccgaataaaacgtaggacttggacctaaaaattgcagcccgaataaattcaggat 29894497  T
Q  223 tttttagcccggcccgaaaaagc 245  Q
    |||||||||||| ||||||||||    
T  29894496 tttttagcccggtccgaaaaagc 29894474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 40633488 - 40633337
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||| || | || ||| | ||||   |||||| |||||||||||||||| ||||||||  || ||||||| | ||||  |||||| |      
T  40633488 tagagctgtcaaaataggtcggggcgttctggccaacccgaaatcccgaataaaatgtagagcctgggccaaaaaattgcaactcgaaacttttcaag-t 40633390  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    ||||| ||||||||| |||||| | ||| |||||| || || |||||||||||    
T  40633389 ttttttgcccggcccaaaaaagtctgtatcccgttagggctgcgggcagcccg 40633337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 314 - 554
Target Start/End: Complemental strand, 20922709 - 20922468
Alignment:
Q  314 gtgtggtctgt-tatgataaaacccatgtatcacgaagcataggaacaattaggagcttcgaagttacacaggaagttgaattgtgttaggtttctttct 412  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  20922709 gtgtggtctgtgtatgatgaaacccatgtatcacgaagcataggaacaattaggaacttcgaagttacacaggaagttgaatagtgttaggtttctttct 20922610  T
Q  413 ccattttatcgattcattttatagatgataattttgttacatagaagatagaacatatatctgatattgtcaatactaaactccaatttagatgtttaat 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  20922609 ccattttatcgattcattttatagatgataattttgttacatagaagatagaacctatatctgatattgtcaatactaaactccaatttcgatgtttaat 20922510  T
Q  513 atttaagcggcagcacatacttcttcctttactgatgatgtc 554  Q
    |||| || ||||||||||||||||||||||||| ||||||||    
T  20922509 atttgagtggcagcacatacttcttcctttacttatgatgtc 20922468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 123 - 278
Target Start/End: Complemental strand, 20922899 - 20922744
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||| || | ||| || |||||||||||||||||||||||||||| |    
T  20922899 tagagctgtcaaaattggccgggccgtacgggccggtccgaaagcccgaataaaatgcagagtctgtgccgaataattgcagcccgaattttttcagggc 20922800  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgcca 278  Q
    |||||||||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  20922799 tttttagcccggcccgaaaaagcccgtagcccgttcaggctacgagcagcccgcca 20922744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 150 - 290
Target Start/End: Original strand, 5271073 - 5271213
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||||| ||||| ||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| |||| |||||    
T  5271073 acgggccggcccgaaagcccgaataaaatgcagggcttgggccgaaaaattggagcccgaatttttccaggactttttagcccggcccgcaaaaccccgt 5271172  T
Q  250 agcccgttcggactacgggcagcccgccagcccgccaaaaa 290  Q
    | |||||| || |||||||||||||||||||||| ||||||    
T  5271173 aacccgttagggctacgggcagcccgccagcccgtcaaaaa 5271213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 9470798 - 9470951
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||||| || |||| ||| |||||| |||||| ||||||||||||||||||  ||||| ||  ||| |||||||||||||||||||| |    
T  9470798 tagagctgtcaaaatggaccgggccttacaggccggcccgaaagcccgaataaaatgtagggtttgggccgataaatagcagcccgaattttttcagggc 9470897  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    ||||||||||||||||||||| |||| ||| ||||||| ||| |||||||||||    
T  9470898 tttttagcccggcccgaaaaatcccgaagcacgttcgggctaagggcagcccgc 9470951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 123 - 253
Target Start/End: Complemental strand, 42730853 - 42730724
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||  | ||||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| |    
T  42730853 tagagctgtcaaaatggatcgggccgtacgggccgggccgaaagcccgaataaaatgcagggcttgggccgaataatagcagcccgaattttttcagggc 42730754  T
Q  223 tttttagcccggcccgaaaaagcccgtagcc 253  Q
    ||||||||||| |||| ||||||||||||||    
T  42730753 tttttagcccgacccg-aaaagcccgtagcc 42730724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 21747391 - 21747525
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  21747391 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 21747490  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  21747491 tttttagcccggcccgtaaaagcccttggcccgtt 21747525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 25096278 - 25096412
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  25096278 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 25096377  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  25096378 tttttagcccggcccgtaaaagcccttggcccgtt 25096412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 15560707 - 15560571
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    ||||||||||||||||| |||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||    
T  15560707 actagagctgtcaaaataggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagg 15560608  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||||| |||||||| | |||||||    
T  15560607 gctttttagcccggcccgtaaaagcccttggcccgtt 15560571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 29201545 - 29201411
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  29201545 tagagctgtcaaaatgggtcgggccgtaagggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 29201446  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  29201445 tttttagcccggcccgtaaaagcccttggcccgtt 29201411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 17920758 - 17920886
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcag 219  Q
    ||||||||||||||||||||| | |||| ||| |||||| |||||| || |||||||||||||||  ||||| ||  ||| |||||| ||||||||| ||    
T  17920758 aactagagctgtcaaaatgggtcgggccttacaggccggcccgaaagcctgaataaaatgtagggtttgggccgataaatagcagcctgaatttttttag 17920857  T
Q  220 gactttttagcccggcccgaaaaagcccg 248  Q
    | |||||||||||||||||||||||||||    
T  17920858 ggctttttagcccggcccgaaaaagcccg 17920886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 40000926 - 40000792
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| |||||||||  ||||||| ||    |||     
T  40000926 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattg-ggcccgaaattgaagaggg 40000828  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  40000827 ctttttagcccggcccgtaaaagcccttggcccgtt 40000792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 15614259 - 15614158
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    ||||||| |||||| |||||||||||| |||||| |||||  |||||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||    
T  15614259 gggccggcccgaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagcccgccccgaaaaagcccggag 15614160  T
Q  252 cc 253  Q
    ||    
T  15614159 cc 15614158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 123 - 243
Target Start/End: Complemental strand, 26556622 - 26556501
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttt-ttcagga 221  Q
    |||||| ||||||||||||| || |||||||||||| ||||||  |||| ||||||||||||| ||||| ||||||||||||| ||||||||    |||     
T  26556622 tagagccgtcaaaatgggccgggacgtacgggccggcccgaaagtccgattaaaatgtagggcttgggccgaataattgcagctcgaattttgaagaggg 26556523  T
Q  222 ctttttagcccggcccgaaaaa 243  Q
    ||||||||||||||||| ||||    
T  26556522 ctttttagcccggcccgtaaaa 26556501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 150 - 255
Target Start/End: Complemental strand, 38838150 - 38838045
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||  || |||||||| ||||||||||| | | ||| |||||||| |||  ||||||||||    
T  38838150 acgggccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcagtccgaatttttttaaggcttgttagcccgacccataaaagcccgt 38838051  T
Q  250 agcccg 255  Q
    ||||||    
T  38838050 agcccg 38838045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 17088355 - 17088259
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtac-gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttt 215  Q
    ||||||||||||||||| ||||| | |||||  ||||||| |||||| ||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  17088355 aactagagctgtcaaaacgggccggcccgtattgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataattttagcccgaattttt 17088259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 17077398 - 17077332
Alignment:
Q  149 tacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttt 215  Q
    |||||||||| |||||| ||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  17077398 tacgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataatttcagcccgaattttt 17077332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 17071329 - 17071260
Alignment:
Q  146 ccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttt 215  Q
    ||||| ||||||| |||||| ||||||||||||||||||  |||||| ||||||| ||||||||||||||    
T  17071329 ccgtatgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataatttcagcccgaattttt 17071260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 40861136 - 40861040
Alignment:
Q  161 cgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||| ||||||||||||||||||| || || ||||||||| |||||||| ||    ||| |||||||||| |||||| |||||||| | |||||||    
T  40861136 cgaaagcccgaataaaatgtagggcttgagccgaataattggagcccgaaattgaagagggctttttagcctggcccgtaaaagcccttggcccgtt 40861040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 4564938 - 4565024
Alignment:
Q  169 cgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgt 256  Q
    ||||||||||||||||| || ||  || |||||||||||||| |||| || || |||||| |||  ||||||||||||||||||||||    
T  4564938 cgaataaaatgtagggcttgtgcctaaaaattgcagcccgaaattttcca-gagtttttaacccaacccgaaaaagcccgtagcccgt 4565024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 4471108 - 4471014
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttt 214  Q
    |||||||||||||||||||||||     ||||||||||| || ||| || || ||||||||||||| |||||  |||||| ||||||| ||||||    
T  4471108 aactagagctgtcaaaatgggccgaattgtacgggccggcccaaaagcctgattaaaatgtagggcttgggccaaataatggcagcccaaatttt 4471014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 12466051 - 12465985
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgg 189  Q
    |||||||||||||||||| |||||| || ||| ||| |||||| ||| ||| |||||||||||||||    
T  12466051 tagagctgtcaaaatgggtcaggccttatgggtcggcccgaaagcccaaattaaatgtagggcctgg 12465985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 314 - 554
Target Start/End: Original strand, 19105934 - 19106161
Alignment:
Q  314 gtgtggtctgt-tatgataaaacccatgtatcacgaagcataggaacaattaggagcttcgaagttacacaggaagttgaattgtgttaggtttctttct 412  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||| |||||||||||||||||    
T  19105934 gtgtggtctgtgtatgatgaaacccatgtatcacgaagcataggaacaattaggaagttcgaagttacacatgaagttgaatagtgttaggtttctttct 19106033  T
Q  413 ccattttatcgattcattttatagatgataattttgttacatagaagatagaacatatatctgatattgtcaatactaaactccaatttagatgtttaat 512  Q
    |||||             |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  19106034 ccatt-------------ttatagatgataattttgttacatagaagatataacctatatctgatattgtcaatactaaactccaa-ttagatgtttaat 19106119  T
Q  513 atttaagcggcagcacatacttcttcctttactgatgatgtc 554  Q
    |||| || ||||||||||||||||||||||||| ||||||||    
T  19106120 atttgagtggcagcacatacttcttcctttacttatgatgtc 19106161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 122 - 273
Target Start/End: Original strand, 41200196 - 41200347
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| |||| |||||||||| |||||| ||| |||||||||||||||||| || ||  ||| ||||||||||||||||||||     
T  41200196 ctagagctgtcaaaatgggccgggccttacgggccggcccgaaagcccaaataaaatgtagggcctgagccgataaatagcagcccgaattttttcaggg 41200295  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcc 273  Q
     |||||||||||| ||||||||||||| ||| ||||||| ||| ||||||||    
T  41200296 ttttttagcccggtccgaaaaagcccgaagcacgttcgggctaagggcagcc 41200347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 120 - 249
Target Start/End: Original strand, 7505208 - 7505337
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcag 219  Q
    ||||||||||||||||| ||||| | ||||| ||||||| |||||| || |||||||||||||||| |||||  |||||||||||||||||||||| |||    
T  7505208 aactagagctgtcaaaacgggccggcccgtatgggccggcccgaaagcctgaataaaatgtagggcttgggcctaataattgcagcccgaatttttccag 7505307  T
Q  220 gactttttagcccggcccgaaaaagcccgt 249  Q
    | ||||||||||||||||| ||||||||||    
T  7505308 ggctttttagcccggcccgtaaaagcccgt 7505337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 49112512 - 49112665
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | |||| |||||||||| |||||| |||||||| ||| ||||||||| || ||  ||| |||||||||||||||||||| |    
T  49112512 tagagctgtcaaaatgggtcgggccttacgggccggcccgaaagcccgaatataatatagggcctgagccgataaatagcagcccgaattttttcagggc 49112611  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    ||||||||||| |||||||||||||  | ||||||||| ||| |||||||||||    
T  49112612 tttttagcccgacccgaaaaagcccaaaacccgttcgggctaagggcagcccgc 49112665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 23025135 - 23025270
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||     
T  23025135 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagaggg 23025234  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| |||||||||    
T  23025235 ctttttagcccggcccgtaaaagcccttagcccgtt 23025270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 1873610 - 1873744
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  1873610 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 1873709  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  1873710 tttttagcccggcccgtaaaagcccttggcccgtt 1873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 152 - 276
Target Start/End: Complemental strand, 47381583 - 47381459
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    ||||||| ||||||| ||| |||||| ||||||| |||||  |||||||| ||||||||||||| |||| |||||||||||||||| |||||||||| ||    
T  47381583 gggccggcccgaaaatccgcataaaacgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccggcccaaaaaagcccggag 47381484  T
Q  252 cccgttcggactacgggcagcccgc 276  Q
    ||||||||| | |||||||||||||    
T  47381483 cccgttcgggccacgggcagcccgc 47381459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 39494180 - 39494044
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agg 220  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||    
T  39494180 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagg 39494081  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||| | |||||||| | |||||||    
T  39494080 gctttttagcccggcctgtaaaagcccttggcccgtt 39494044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 31272252 - 31272129
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||| ||| | ||||||| ||||||  || ||| ||||||||||||||||||| |||||  |||||||||||| ||||||||| ||||     
T  31272252 ctagagctgtcaaaacgggtcgggccgtatgggccgacccaaaagcccgaataaaatgtagggcttgggcctaataattgcagcacgaatttttccaggg 31272153  T
Q  222 ctttttagcccggcccgaaaaagc 245  Q
    ||||||||||||||||| ||||||    
T  31272152 ctttttagcccggcccgtaaaagc 31272129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 117 - 257
Target Start/End: Original strand, 16526156 - 16526296
Alignment:
Q  117 cccaactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttttt 216  Q
    ||||| |||||||||||||||||||| ||||||| ||||||| ||||||  |||||||||||||||||| || || ||||||||| |||||||| ||       
T  16526156 cccaagtagagctgtcaaaatgggccgggccgtaagggccggcccgaaagtccgaataaaatgtagggcttgagccgaataattggagcccgaaattgaa 16526255  T
Q  217 caggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||| |||||||| |||||||| |||||||| | |||||||    
T  16526256 gagggctttttagtccggcccgtaaaagcccttggcccgtt 16526296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 291
Target Start/End: Complemental strand, 17511404 - 17511268
Alignment:
Q  155 ccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagccc 254  Q
    |||| |||||| || |||||||||||||| ||||||| ||  ||| | ||||||||||||||||||  |||||||||||||||||||||||||| ||| |    
T  17511404 ccggcccgaaagcctgaataaaatgtaggtcctgggccgataaatagtagcccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctc 17511305  T
Q  255 gttcggactacgggcagcccgccagcccgccaaaaaa 291  Q
    |||||| ||| |||||||||   ||||||| ||||||    
T  17511304 gttcgggctaagggcagcccaatagcccgcaaaaaaa 17511268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 291
Target Start/End: Original strand, 17541810 - 17541946
Alignment:
Q  155 ccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagccc 254  Q
    |||| |||||| || |||||||||||||| ||||||| ||  ||| | ||||||||||||||||||  |||||||||||||||||||||||||| ||| |    
T  17541810 ccggcccgaaagcctgaataaaatgtaggtcctgggccgataaatagtagcccgaattttttcagggttttttagcccggcccgaaaaagcccgaagctc 17541909  T
Q  255 gttcggactacgggcagcccgccagcccgccaaaaaa 291  Q
    |||||| ||| |||||||||   ||||||| ||||||    
T  17541910 gttcgggctaagggcagcccaatagcccgcaaaaaaa 17541946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 35709867 - 35710004
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| |||  ||||| || ||||| | |||||| ||||||||||| | ||||| |||||  || |||||||||||  ||||| ||||| |    
T  35709867 tagagctgtcaaaacgggttaggccatatgggccagcccgaaagcccgaataaaacgcagggcttgggcctaaaaattgcagcccatattttatcagggc 35709966  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcgg 260  Q
    |||||||||||||||||||||||||| | |||||||||    
T  35709967 tttttagcccggcccgaaaaagcccgcaacccgttcgg 35710004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 270
Target Start/End: Original strand, 33604559 - 33604676
Alignment:
Q  153 ggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagc 252  Q
    |||||| ||||||  |||| ||||| ||||||| |||||  |||||||| ||||||||||||| |||| |||||||||||| ||||||||||||| ||||    
T  33604559 ggccggcccgaaagtccgagtaaaacgtagggcttgggcctaataattgtagcccgaatttttccagggctttttagcccgacccgaaaaagcccatagc 33604658  T
Q  253 ccgttcggactacgggca 270  Q
    ||||| || | |||||||    
T  33604659 ccgttagggccacgggca 33604676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 4266886 - 4266986
Alignment:
Q  176 aatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||| ||||| ||  ||| |||||||||||||||||||| ||||||||||| || |||||| ||||| ||| ||||||| ||| ||||||||||    
T  4266886 aatgtagggcatgggccgataaatagcagcccgaattttttcagggctttttagcccagcacgaaaatgcccgaagctcgttcgggctaagggcagcccg 4266985  T
Q  276 c 276  Q
    |    
T  4266986 c 4266986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 2621533 - 2621419
Alignment:
Q  162 gaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcgga 261  Q
    |||| ||||||||||| ||||||  || ||  ||||||||||||||||||||| ||| | | |||||  ||||||| ||||||||||||||||||| ||     
T  2621533 gaaagcccgaataaaacgtagggtttgagcctaataattgcagcccgaattttctcaaggccttttaatccggcccaaaaaagcccgtagcccgtttggg 2621434  T
Q  262 ctacgggcagcccgc 276  Q
    | |||| ||||||||    
T  2621433 ccacggacagcccgc 2621419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 17475819 - 17475737
Alignment:
Q  175 aaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||| || ||  ||| ||||||||||||||||||||  ||||||||||| |||||||||||||| ||| ||||    
T  17475819 aaatgtagggcctgagccgataaatagcagcccgaattttttcagggttttttagcccgacccgaaaaagcccgaagctcgtt 17475737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 17577395 - 17577477
Alignment:
Q  175 aaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||| || ||  ||| ||||||||||||||||||||  ||||||||||| |||||||||||||| ||| ||||    
T  17577395 aaatgtagggcctgagccgataaatagcagcccgaattttttcagggttttttagcccgacccgaaaaagcccgaagctcgtt 17577477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 152 - 247
Target Start/End: Original strand, 10993189 - 10993285
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-aggactttttagcccggcccgaaaaagccc 247  Q
    ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| ||| |||| |||    ||| ||||||||||||||||| ||||||||    
T  10993189 gggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagctcgaaatttgaagagggctttttagcccggcccgtaaaagccc 10993285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 255
Target Start/End: Original strand, 19105787 - 19105913
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||||||||| |||||||||||| ||        ||||| |||||||||||  ||||   ||||||||||| |   ||||||||||||    
T  19105787 actagagctgtcaaaatgggccgggccgtacgggctgg--------cccgactaaaatgtaggatctggatcgaataattgcaactgaaattttttcagg 19105878  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccg 255  Q
      ||||||||  |||||||||||| ||||||||||    
T  19105879 gttttttagcttggcccgaaaaaggccgtagcccg 19105913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 22791951 - 22791912
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccg 162  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  22791951 tagagctgtcaaaatgggccaggtcttacgggccggtccg 22791912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 31271550 - 31271521
Alignment:
Q  219 ggactttttagcccggcccgaaaaagcccg 248  Q
    ||||||||||||||||||||||||||||||    
T  31271550 ggactttttagcccggcccgaaaaagcccg 31271521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 5905793 - 5905688
Alignment:
Q  17 aaaattcacatatcaatgcaagtgctacatgggcggattgagagggtgaccccatgtgaccacggtctaccccctccatcaagatcttctttctttctca 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5905793 aaaaatcacatatcaatgcaagtgctacatgggcggattgagagggtgaccccatgtgaccatggtctaccccctccatcaagatcttctttctttctca 5905694  T
Q  117 cccaac 122  Q
    ||||||    
T  5905693 cccaac 5905688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 48470561 - 48470408
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||| | |||| |||||||||| || ||| |||||||||||||||||| |||||| ||  ||| ||||||||||||||||||||||    
T  48470561 tagaggtgtcaaaatgggtcgggccttacgggccggcccaaaagcccgaataaaatgtagggtctgggccgataaatagcagcccgaattttttcaggac 48470462  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  48470461 tttttagcccggcccgaaaaagcccgaagcccgttcgggctaagggcagcccgc 48470408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 122 - 278
Target Start/End: Original strand, 32057529 - 32057685
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||| | ||||||||||| ||| ||||| |||||||||||||  |||     
T  32057529 ctagagctgtcaaaatggggcgggccgtatgggccggcccgaaatcccgaataaaacgcagggcctgggccgaaaaattggagcccgaatttttctaggg 32057628  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgcca 278  Q
    ||||||||||||| ||| ||||||||||| ||||||||| |  ||||||||||||||    
T  32057629 ctttttagcccggtccgtaaaagcccgtaacccgttcgggcctcgggcagcccgcca 32057685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 122 - 275
Target Start/End: Original strand, 45565733 - 45565886
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||| ||||||||||||| |||| | ||||||||||  |||||| || ||||||||||||||||| ||||||  ||| |||||||||| |||||||||     
T  45565733 ctagaactgtcaaaatgggtcaggtcttacgggccggctcgaaaatccaaataaaatgtagggcctaggctgataaatagcagcccgaaatttttcaggg 45565832  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||||||||||||||| || | ||||||||||| ||| ||||||||||    
T  45565833 ctttttagcccggcccgaaaaaacctgaagcccgttcgggctaagggcagcccg 45565886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 121 - 257
Target Start/End: Complemental strand, 43781303 - 43781167
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||    
T  43781303 actagagctgtcaaaatgggccaggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagg 43781204  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
      |||||||||||||||| |||||||| | |||||||    
T  43781203 gttttttagcccggcccgtaaaagcccttggcccgtt 43781167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 33188999 - 33189134
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||     
T  33188999 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagaggg 33189098  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  33189099 ctttttagcccggcccgtaaaagcccttggcccgtt 33189134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 49229296 - 49229146
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||||||||||| || |||| |||||||| | |||||| ||||||||||||| ||||  ||||| ||  ||| |||||||| ||||||||||| |    
T  49229296 tagagctgtcaaaatggaccgggccttacgggccagcccgaaagcccgaataaaatgcagggtttgggccgataaatagcagcccggattttttcagggc 49229197  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagccc 274  Q
    |||||||||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  49229196 tttttagccc-gcccgaaaaagcccgaagcccgttcgggctaagggcagccc 49229146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 9660957 - 9660823
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  9660957 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaatcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 9660858  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  9660857 tttttagcccggcccgtaaaagcccttggcccgtt 9660823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 46237689 - 46237575
Alignment:
Q  162 gaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcgga 261  Q
    |||| |||||||||||| |||||| |||||  |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||     
T  46237689 gaaagcccgaataaaatatagggcttgggcctaataattgcagcccgaatttttccagggctttttagctcggcccgaaaaagcccggagcccgttcggg 46237590  T
Q  262 ctacgggcagcccgc 276  Q
    | |||||||||||||    
T  46237589 ccacgggcagcccgc 46237575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 12745549 - 12745686
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-ag 219  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    ||    
T  12745549 actagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatag 12745648  T
Q  220 gactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    | ||||||||||||||||| |||||||| | |||||||    
T  12745649 ggctttttagcccggcccgtaaaagcccttggcccgtt 12745686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 12756538 - 12756675
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-ag 219  Q
    |||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    ||    
T  12756538 actagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatag 12756637  T
Q  220 gactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    | ||||||||||||||||| |||||||| | |||||||    
T  12756638 ggctttttagcccggcccgtaaaagcccttggcccgtt 12756675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 42763383 - 42763249
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  42763383 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattgaagcccgaaattgaagagggc 42763284  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||| ||| |||||||| | |||||||    
T  42763283 tttttagcccggtccgtaaaagcccttggcccgtt 42763249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 126 - 275
Target Start/End: Original strand, 6501582 - 6501735
Alignment:
Q  126 agctgtcaaaatgggccaggcc----gtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||| ||||     |||||||||  |||||| ||||||||||||| ||||||||||| ||  ||| | ||||| |||||||||||      
T  6501582 agctgtcaaaatgggccgggccttaattacgggccgacccgaaagcccgaataaaatgcagggcctgggccgataaatagaagcccaaattttttcagag 6501681  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    ||||||||||||||||||||||||||| |||||||| || ||| ||||||||||    
T  6501682 ctttttagcccggcccgaaaaagcccgaagcccgtttgggctaagggcagcccg 6501735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 45757372 - 45757238
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  45757372 tagagctgtcaaaatgggtcgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 45757273  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||  |||||||| | |||||||    
T  45757272 tttttagcccggcccataaaagcccttggcccgtt 45757238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 4220887 - 4221010
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    |||||||||||||| |||||| |||||| ||||||||||| ||| ||| || |||| |||||||| ||| |||||||||| |||||| ||||||||| ||    
T  4220887 gggccggtccgaaagcccgaaaaaaatgcagggcctgggccgaaaaatggccgcccaaatttttttagggctttttagcctggcccg-aaaagcccgcag 4220985  T
Q  252 cccgttcggactacgggcagcccgc 276  Q
    |||| |||||||| |||||||||||    
T  4220986 cccgctcggactaagggcagcccgc 4221010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 47188695 - 47188564
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| | ||||| | |||| ||||||||||||||||||| |||||  |||||||| |||| ||| ||    |||||    
T  47188695 tagagctgtcaaaatgggcc-ggccgtaagagccggcctgaaagcccgaataaaatgtagggcttgggc--aataattggagcctgaaattgaagaggac 47188599  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  47188598 tttttagcccggcccgtaaaagcccttggcccgtt 47188564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 31489638 - 31489509
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcag 219  Q
    ||||||||||||||||| ||||| ||||| | ||||| | |||||| |||||||||||  |||||| |||||  || |||| ||||||||||   ||| |    
T  31489638 aactagagctgtcaaaacgggccgggccgaatgggccagcccgaaagcccgaataaaacatagggcttgggcctaaaaattacagcccgaataaattccg 31489539  T
Q  220 gactttttagcccggcccgaaaaagcccgt 249  Q
    | ||||||| ||||||||||||| ||||||    
T  31489538 ggctttttaacccggcccgaaaaggcccgt 31489509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 17331280 - 17331370
Alignment:
Q  167 cccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||||||||| | ||  ||| ||||| | | |||||||||| |||||||| | || ||||||||||||| ||||||||    
T  17331280 cccgaataaaatgtagggcctggaccgataaatagcagctcaagttttttcagggctttttaggctggtccgaaaaagcccgaagcccgtt 17331370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 33815083 - 33815043
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccg 162  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  33815083 ctagagctgtcaaaacgggccaggccgtatgggccggtccg 33815043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 33874553 - 33874513
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccg 162  Q
    ||||||||||||||| ||||||||||||| |||||||||||    
T  33874553 ctagagctgtcaaaacgggccaggccgtatgggccggtccg 33874513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 45039032 - 45039086
Alignment:
Q  203 agcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| | ||||||    
T  45039032 agcccgaatttttccagggttttttagcccgacccgaaaaagcccgcaacccgtt 45039086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 242
Target Start/End: Original strand, 30533365 - 30533486
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||| || || | ||  | ||| ||| |||||| ||||||||||||||||| | |||||  || |||| ||||||| ||   ||  ||    
T  30533365 actagagctgtcaaaacggaccggaccaaatgggtcggcccgaaagcccgaataaaatgtaggtcttgggcctaaaaattacagcccggatagattatgg 30533464  T
Q  221 actttttagcccggcccgaaaa 242  Q
     |||||||||||||||||||||    
T  30533465 gctttttagcccggcccgaaaa 30533486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 123 - 276
Target Start/End: Original strand, 20139188 - 20139341
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| | ||||| ||||||| |||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||| |||| |    
T  20139188 tagagctgtcaaaacgggcccgcccgtatgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggc 20139287  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  20139288 tttttagcccggcccgaaaaagcccggagcccgttcgggccacgggcagcccgc 20139341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 22193681 - 22193528
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| | ||||| ||||||| |||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||| |||| |    
T  22193681 tagagctgtcaaaacgggcccgcccgtatgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttccagggc 22193582  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  22193581 tttttagcccggcccgaaaaagcccggagcccgttcgggccacgggcagcccgc 22193528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 12272343 - 12272224
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  12272343 actagagctgtcaaaatgggccgggccttacgggccggcccgaaagcccgaataaaatgtagggcctgggccgataaatagcagcccgaattttttcagg 12272244  T
Q  221 actttttagcccggcccgaa 240  Q
     |||||||||||||||||||    
T  12272243 gctttttagcccggcccgaa 12272224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 3044281 - 3044405
Alignment:
Q  151 cgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgta 250  Q
    ||||||| ||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||  ||||||    
T  3044281 cgggccgatccgaaagcccgaataaaatgcagggcctgggccgaataatagcagcccgaattttttcagggttttttagcccggcccgaaaatacccgta 3044380  T
Q  251 gcccgttcggactacgggcagcccg 275  Q
    |||||||| | ||  ||||||||||    
T  3044381 gcccgttctggctgagggcagcccg 3044405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 15065901 - 15066035
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||| ||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  15065901 tagagctgtcaaaatgagccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 15066000  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  15066001 tttttagcccggcccgtaaaagcccttggcccgtt 15066035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 31472594 - 31472487
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||  ||||||||||||||||||||||  ||| |||||||||| |||||||||||||| |     
T  31472594 acgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaatttttctagggctttttagccaggcccgaaaaagccagg 31472495  T
Q  250 agcccgtt 257  Q
    ||||||||    
T  31472494 agcccgtt 31472487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 10997714 - 10997848
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | ||||||| ||||||  |||||| ||||||||||||| ||||| ||||| ||||||||| |||||||| ||    ||| |    
T  10997714 tagagctgtcaaaatgggtcgggccgtaagggccgacccgaaagcccgaataaaatggagggcttgggccgaataattggagcccgaaattgaagagggc 10997813  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  10997814 tttttagcccggcccgtaaaagcccttggcccgtt 10997848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 122 - 247
Target Start/End: Complemental strand, 27966887 - 27966762
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||| ||| | | ||||  ||||||| |||||| ||||| ||||||||||||| |||||  |||||||||||||| ||||||| ||||     
T  27966887 ctagagctgtcaaaacgggtcggaccgtgtgggccggcccgaaagcccgagtaaaatgtagggcttgggcctaataattgcagcccaaatttttccaggg 27966788  T
Q  222 ctttttagcccggcccgaaaaagccc 247  Q
    ||||||||||||||||  ||||||||    
T  27966787 ctttttagcccggcccataaaagccc 27966762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 283
Target Start/End: Complemental strand, 31655663 - 31655503
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| ||||| | ||||| | |||||| |||||||||||  |||||  |||||  || |||| ||||||||||   ||| || |    
T  31655663 tagagctgtcaaaacgggccgggccgaatgggccagcccgaaagcccgaataaaacatagggtttgggcctaaaaattacagcccgaataaattccgggc 31655564  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccg 283  Q
    |||||||||||| |||||||||||||| |||||||||| || |||| |||||| |||||||    
T  31655563 tttttagcccggtccgaaaaagcccgttgcccgttcgggcttcgggtagcccggcagcccg 31655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 12076737 - 12076625
Alignment:
Q  160 ccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcg 259  Q
    |||||| ||||||||||||||||||||||| | ||  ||| ||||||| |||||||||||| ||||||| ||||||||||||||||||| || ||||| |    
T  12076737 ccgaaagcccgaataaaatgtagggcctggcc-gataaatagcagcccaaattttttcagggctttttaacccggcccgaaaaagcccgaagtccgttag 12076639  T
Q  260 gactacgggcagcc 273  Q
    | ||| ||||||||    
T  12076638 ggctaagggcagcc 12076625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 11369712 - 11369577
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||| | | |||||| |||||||||||||||| |  ||||| ||||||||| |||||||| |||    |||     
T  11369712 tagagctgtcaaaatgggccgggccgtaagggtcagcccgaaagcccgaataaaatgtagagtttgggccgaataattggagcccgaaatttaaagaggg 11369613  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  11369612 ctttttagcccggcccgtaaaagcccttggcccgtt 11369577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 17869348 - 17869271
Alignment:
Q  171 aataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccg 248  Q
    |||||||  |||||| |||||| || |||| |||||||||||||||||||  ||||||||||||||||||||||||||    
T  17869348 aataaaacttagggcttgggctaaaaaattccagcccgaattttttcagggttttttagcccggcccgaaaaagcccg 17869271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 17879100 - 17879033
Alignment:
Q  171 aataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccg 238  Q
    |||||||  |||||| |||||| || |||| ||||||||||||||||||| |||||||||| ||||||    
T  17879100 aataaaacttagggcttgggctaaaaaattccagcccgaattttttcagggctttttagcctggcccg 17879033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 32465776 - 32465648
Alignment:
Q  129 tgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggacttttta 228  Q
    ||||||||  |||| | ||||||||||||  |||||| |||||| |||||||||||| |||||  || ||| ||| |||||||||   |||| ||||||     
T  32465776 tgtcaaaacaggccggtccgtacgggccgacccgaaagcccgaa-aaaatgtagggcttgggcctaaaaatggcaacccgaatttaaacagggctttttt 32465678  T
Q  229 g-cccggcccgaaaaagcccgtagcccgtt 257  Q
    | ||||||||| ||||||||| ||| ||||    
T  32465677 gacccggcccgtaaaagcccgaagctcgtt 32465648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 123 - 273
Target Start/End: Original strand, 6139 - 6290
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggcc-ggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    |||||||||||||||||||| |||  |||||||| || |||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||||||     
T  6139 tagagctgtcaaaatgggccgggctttacgggcctgggccgatagcccgaataaaatgtagggcctgggcggaataattgcagtccgaattttttcaggg 6238  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcc 273  Q
    ||||||||||||||||| ||||| ||||| |||||| || ||||||||||||    
T  6239 ctttttagcccggcccgcaaaagtccgtaacccgttagggctacgggcagcc 6290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 3654 - 3749
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggt-ccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc 217  Q
    |||||||||||||||||||| |||  |||||||| || |||| ||||||||||||||| |||| |||||| |||||||||||| ||||||||||||    
T  3654 tagagctgtcaaaatgggccgggctttacgggcctgtgccgataacccgaataaaatgcagggtctgggccgaataattgcagtccgaattttttc 3749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 123 - 290
Target Start/End: Complemental strand, 6888856 - 6888689
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||||| | ||||| ||||||| |||||| |||| ||||||| |||||| |||||  |||||||| ||||||||||||| |||| |    
T  6888856 tagagttgtcaaaatgggccggcccgtatgggccggcccgaaagcccgcataaaatatagggcttgggcctaataattggagcccgaatttttccagggc 6888757  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaa 290  Q
    |||||||||||||||| ||||||||| ||||||||||| | |||||||||||| |||||||| |||||    
T  6888756 tttttagcccggcccggaaaagcccggagcccgttcgggccacgggcagcccgacagcccgcaaaaaa 6888689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 120 - 290
Target Start/End: Original strand, 43735955 - 43736124
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcag 219  Q
    ||||||||||||||||||||| | ||||||| ||||| | |||||| ||||||||||| | ||||||||||| ||| ||||| ||||| |||||| | ||    
T  43735955 aactagagctgtcaaaatgggtcgggccgtatgggccagcccgaaagcccgaataaaacgcagggcctgggccgaaaaattggagcccaaattttct-ag 43736053  T
Q  220 gactttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaa 290  Q
    | ||||||||||||||||| ||||||||||| ||| ||||| |  ||||||||||||||||||||||||||    
T  43736054 ggctttttagcccggcccgtaaaagcccgtaacccattcgggcctcgggcagcccgccagcccgccaaaaa 43736124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 21076020 - 21075886
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  21076020 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 21075921  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  21075920 tttttagcccggcccgtaaaagcccttggcccgtt 21075886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 43746417 - 43746281
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agg 220  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||    
T  43746417 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagg 43746318  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||||| |||||||| | |||||||    
T  43746317 gctttttagcccggcccgtaaaagcccttggcccgtt 43746281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 152 - 272
Target Start/End: Original strand, 33982994 - 33983114
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    ||||||| |||||| ||| ||||||||||||||| |||||  |||||||| ||||||||||||| |||| ||||||||||||||||| ||||||||| ||    
T  33982994 gggccggcccgaaagcccaaataaaatgtagggcttgggcctaataattggagcccgaatttttccagggctttttagcccggcccggaaaagcccggag 33983093  T
Q  252 cccgttcggactacgggcagc 272  Q
    |||||| || | |||||||||    
T  33983094 cccgtttgggccacgggcagc 33983114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 121 - 264
Target Start/End: Complemental strand, 42854427 - 42854284
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    |||||||||||||||||||||| |  |||| ||||| | |||||| |||| |||||| ||||||| |||||  |||||||| |||||||||||||||| |    
T  42854427 actagagctgtcaaaatgggccggctcgtatgggccagcccgaaagcccgcataaaacgtagggcttgggcctaataattggagcccgaattttttcaag 42854328  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgttcggacta 264  Q
     |||||||||||||||  |||||||||| || ||||| ||||||    
T  42854327 gctttttagcccggcctaaaaaagcccggagtccgttaggacta 42854284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 46311832 - 46311966
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||| | ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| ||||| || ||    ||| |    
T  46311832 tagagctgtcaaaatgggtcgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggc 46311931  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  46311932 tttttagcccggcccgtaaaagcccttggcccgtt 46311966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 122 - 245
Target Start/End: Original strand, 19975753 - 19975876
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaa-cccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagg 220  Q
    ||||||||||||||| ||| | || |||| ||||||| ||||||| ||||||||||||||||||| ||||   |||||||||||||||||||||| ||||    
T  19975753 ctagagctgtcaaaacgggtcgggtcgtatgggccgg-ccgaaaagcccgaataaaatgtagggcttgggtctaataattgcagcccgaatttttccagg 19975851  T
Q  221 actttttagcccggcccgaaaaagc 245  Q
     ||||||||||||||||| ||||||    
T  19975852 gctttttagcccggcccgtaaaagc 19975876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 27969483 - 27969599
Alignment:
Q  160 ccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcg 259  Q
    |||||| |||| |||||| ||||||| |||||  |||||||| ||||||||||||| | || ||||||||||||| ||||||||||||| ||||||||||    
T  27969483 ccgaaagcccgcataaaacgtagggcttgggcctaataattggagcccgaatttttcccgggctttttagcccggaccgaaaaagcccggagcccgttcg 27969582  T
Q  260 gactacgggcagcccgc 276  Q
    | | |||||||||||||    
T  27969583 ggccacgggcagcccgc 27969599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 46219071 - 46219206
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaa-cccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    |||||||||| ||||||||| ||||||| ||||||| ||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||     
T  46219071 tagagctgtcgaaatgggccgggccgtaagggccggcccgaaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagaggg 46219170  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||| |||||| |||||||| | |||||||    
T  46219171 ctttttagccgggcccgtaaaagcccttggcccgtt 46219206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 50738075 - 50737922
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||  | || | |||||||| | |||||   |||||||||||||||||||||||| ||  ||| |||| |||||||||||||||      
T  50738075 tagagatgtcaaaatggatcgggtcttacgggccagcccgaatgtccgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggt 50737976  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    |||||||||||||||||||||||||| ||| |||| || ||| | |||||||||    
T  50737975 tttttagcccggcccgaaaaagcccgaagctcgttagggctaagagcagcccgc 50737922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 123 - 275
Target Start/End: Original strand, 50774779 - 50774931
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||| |||||||||||  | || | |||||||| | |||||   |||||||||||||||||||||||| ||  ||| |||| |||||||||||||||      
T  50774779 tagagatgtcaaaatggatcgggtcttacgggccagcccgaatgtccgaataaaatgtagggcctgggccgataaatagcagtccgaattttttcagggt 50774878  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccg 275  Q
    |||||||||||||||||||||||||| ||| |||| || ||| | ||||||||    
T  50774879 tttttagcccggcccgaaaaagcccgaagctcgttagggctaagagcagcccg 50774931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 284
Target Start/End: Original strand, 2868979 - 2869140
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctggg-ctgaataattgcagcccgaattttttcagga 221  Q
    |||||||||||||| ||| | ||||||| |||| || |||||| ||||||||||| |||| || |||| ||||| ||||||||||||||||| || |||     
T  2868979 tagagctgtcaaaaggggtcgggccgtatgggctggcccgaaagcccgaataaaacgtagagcttgggcctgaa-aattgcagcccgaatttctttaggg 2869077  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgc 284  Q
    ||||||| |||||||||  ||||||| || ||||| ||| ||||||| || ||| ||||||||    
T  2869078 ctttttaacccggcccgtgaaagcccataacccgtacgggctacgggtagtccggcagcccgc 2869140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 27877526 - 27877634
Alignment:
Q  149 tacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccg 248  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| ||||||||||||||||| ||||||||     
T  27877526 tacggcccggtccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagccct 27877625  T
Q  249 tagcccgtt 257  Q
    | |||||||    
T  27877626 tggcccgtt 27877634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 283
Target Start/End: Complemental strand, 26844645 - 26844487
Alignment:
Q  125 gagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactt 224  Q
    ||||||||||||| || | || | || ||||||| | ||||  |||||||||||||||||  ||||| ||| | | |||| || ||| |||| ||  |||    
T  26844645 gagctgtcaaaataggtcgggtcttatgggccggccagaaagtccgaataaaatgtagggtttgggccgaaaagtagcagtccaaatatttttagagctt 26844546  T
Q  225 tttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccg 283  Q
    ||||||| ||||||||||  |||||||||||||||| ||| |||||| ||| |||||||    
T  26844545 tttagcctggcccgaaaatacccgtagcccgttcgggctaagggcagtccggcagcccg 26844487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 24310802 - 24310885
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccg 233  Q
    ||||||||| |||||||||||||||||| ||||||  | | |  || |||||||||||||||||||| |||| |||||||||||    
T  24310802 acgggccggcccgaaaacccgaataaaacgtagggtttagacctaaaaattgcagcccgaatttttttaggattttttagcccg 24310885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 33908229 - 33908103
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    |||||||||||||| |||||||||||   ||||||||||| ||| ||||| |||||||||||||  ||| ||||||||||||||||| |||||||||||     
T  33908229 gggccggtccgaaagcccgaataaaacacagggcctgggccgaaaaattggagcccgaatttttctagggctttttagcccggcccgtaaaagcccgtaa 33908130  T
Q  252 cccgttcggactacgggcagcccgcca 278  Q
    ||||||||| |||||||||||||||||    
T  33908129 cccgttcgggctacgggcagcccgcca 33908103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 6955921 - 6955787
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  6955921 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 6955822  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  6955821 tttttagcccggcccgtaaaagcccttggcccgtt 6955787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 120 - 290
Target Start/End: Complemental strand, 10642178 - 10642008
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcag 219  Q
    ||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||    
T  10642178 aactagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagag 10642079  T
Q  220 gactttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgccagcccgccaaaaa 290  Q
    | ||||||||||||||||| |||||| | | ||||||| || || ||| | |||||  ||||||| |||||    
T  10642078 ggctttttagcccggcccgtaaaagctcttggcccgttagggctccggactgcccgaaagcccgcaaaaaa 10642008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 20338638 - 20338504
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| |||  |||||||||| ||||||  |||||||||||||||||||| ||| ||  ||| ||||||||||||||||||||      
T  20338638 tagagctgtcaaaatgggccgggctttacgggccggcccgaaagtccgaataaaatgtagggcctaggccgataaatagcagcccgaattttttcaggga 20338539  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||| ||||||||||||| ||| ||||    
T  20338538 tttttagcccggtccgaaaaagcccgaagctcgtt 20338504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 21731688 - 21731822
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  21731688 tagagctgtcaaaatgggccgggccgtaagggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 21731787  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  21731788 tttttagcccggcccgtaaaagcccttggcccgtt 21731822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 35038882 - 35038748
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  35038882 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 35038783  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  35038782 tttttagcccggcccgtaaaagcccttggcccgtt 35038748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 6238155 - 6238291
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agg 220  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||    
T  6238155 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagagg 6238254  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||||| |||||||| | |||||||    
T  6238255 gctttttagcccggcccgtaaaagcccttggcccgtt 6238291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 122 - 257
Target Start/End: Original strand, 35838080 - 35838216
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agg 220  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||    
T  35838080 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaatagg 35838179  T
Q  221 actttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     ||||||||||||||||| |||||||| | |||||||    
T  35838180 gctttttagcccggcccgtaaaagcccttggcccgtt 35838216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 6899866 - 6900001
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| |||    |||     
T  6899866 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaatttgaagaggg 6899965  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  6899966 ctttttagcccggcccgtaaaagcccttggcccgtt 6900001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 38356155 - 38356021
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| || |||| ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| |    
T  38356155 tagagctgtcaaaatgggccgggtcgtaagggccggcccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggc 38356056  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  38356055 tttttagcccggcccgtaaaagcccttggcccgtt 38356021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 24477257 - 24477392
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-agga 221  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| || || ||||||||| |||||||| |||    |||     
T  24477257 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggcttgagccgaataattggagcccgaaatttgaagaggg 24477356  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  24477357 ctttttagcccggcccgtaaaagcccttggcccgtt 24477392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 150 - 257
Target Start/End: Complemental strand, 38976351 - 38976244
Alignment:
Q  150 acgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgt 249  Q
    ||||||||| |||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||   | | ||||||||||||||||||||||||||||    
T  38976351 acgggccggcccgaaagcccgaataaaacgtagggcttgggcctaataattgcagcccgaattttccaaaggctttttagcccggcccgaaaaagcccgt 38976252  T
Q  250 agcccgtt 257  Q
    ||||||||    
T  38976251 agcccgtt 38976244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 3436849 - 3436697
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||| || || |  |||||||||||||||||  | ||||||||||||||| || |||  |  ||| || ||||||||||||| ||| |    
T  3436849 tagagctgtcaaaatgagcaag-ctttacgggccggtccgaaagtctgaataaaatgtagggtcttggccaataaatagctgcccgaatttttttagggc 3436751  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgttcggactacgggcagcccgc 276  Q
    ||||||||||||| |||||||||||| ||||||||||| ||| |||||||||||    
T  3436750 tttttagcccggctcgaaaaagcccgaagcccgttcgggctaagggcagcccgc 3436697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 4700057 - 4699925
Alignment:
Q  126 agctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttc-aggactt 224  Q
    ||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||  ||||| ||||||||| |||||||| |||    ||| |||    
T  4700057 agctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggtttgggccgaataattggagcccgaaatttgaatagggctt 4699958  T
Q  225 tttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||| |||||||| | |||||||    
T  4699957 tttagcccggcccgtaaaagcccttggcccgtt 4699925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 123 - 255
Target Start/End: Complemental strand, 37206168 - 37206036
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| ||||| | |||||  |||||| |||||| ||||||||||| ||||||| |||||  || ||||||| ||||| |||||| ||| |    
T  37206168 tagagctgtcaaaacgggccggcccgtataggccggcccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcaacccgattttttttagggc 37206069  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccg 255  Q
    |||||||| ||||||| ||||||||||||||||    
T  37206068 tttttagctcggcccgtaaaagcccgtagcccg 37206036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 42860446 - 42860311
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||  ||||| ||||||||| |||||||| ||    |||     
T  42860446 ctagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataaaatgtagggtttgggccgaataattggagcccgaaattgaagaggg 42860347  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
     |||||||||| ||||| |||||||| | |||||||    
T  42860346 ttttttagcccagcccgtaaaagcccttggcccgtt 42860311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 40918036 - 40917914
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    ||||||||| |||||||| | | || ||||| ||||||||||| |||||||||||||||||| ||| |||||  ||| |||||||||||||||||||  |    
T  40918036 tagagctgtgaaaatgggtctgtccttacggaccggtccgaaagcccgaataaaatgtagggtctgagctgataaatagcagcccgaattttttcagagc 40917937  T
Q  223 tttttagcccggcccgaaaaagc 245  Q
    ||||||||| |||| ||||||||    
T  40917936 tttttagcctggcctgaaaaagc 40917914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 17085400 - 17085519
Alignment:
Q  153 ggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagc 252  Q
    ||||| ||||||| |||||||||||||||||| |||||| ||||||||| ||||||||||||   |||  ||||||| ||  ||| |||||||||| | |    
T  17085400 ggccgttccgaaagcccgaataaaatgtagggtctgggccgaataattgaagcccgaattttccaaggtttttttagtccaacccaaaaaagcccgcaac 17085499  T
Q  253 ccgttcggactacgggcagc 272  Q
    |||||||| |||||||||||    
T  17085500 ccgttcgggctacgggcagc 17085519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 257
Target Start/End: Original strand, 9996243 - 9996348
Alignment:
Q  152 gggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtag 251  Q
    ||||||| |||||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    ||| ||||||||||||||||| |||||||| | |    
T  9996243 gggccgggccgaaagcccgaataaaatgtagggcttgggccgaataattggagcccgaaattgaagagggctttttagcccggcccgtaaaagcccttgg 9996342  T
Q  252 cccgtt 257  Q
    ||||||    
T  9996343 cccgtt 9996348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 6452985 - 6453120
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaatttt-ttcagga 221  Q
    ||||||||||||||||| || || | |||| ||||||| |||| | ||||||||||||||||  || || ||||||||||||||||||||||    |||     
T  6452985 tagagctgtcaaaatggaccgggtcatacgagccggtctgaaagctcgaataaaatgtagggtttgtgccgaataattgcagcccgaattttgaagaggg 6453084  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||| |||| |||| |||||| ||||||    
T  6453085 ctttttagcccgacccgtaaaaacccgtaacccgtt 6453120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 123 - 257
Target Start/End: Original strand, 36016253 - 36016379
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||||||||| ||||||| |||||||        ||||||||||||||||||| ||||| ||||||||| ||||| || ||    ||| |    
T  36016253 tagagctgtcaaaatgggccgggccgtaagggccgg--------cccgaataaaatgtagggcttgggccgaataattggagcccaaaattgaagagggc 36016344  T
Q  223 tttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| |||||||| | |||||||    
T  36016345 tttttagcccggcccgtaaaagcccttggcccgtt 36016379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 38986735 - 38986610
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggac 222  Q
    |||||||||||||| |||| || ||| | ||||||| |||  | || || |||||  |||||| |||||| || |||| ||||||||||||||  ||| |    
T  38986735 tagagctgtcaaaacgggctagcccgaatgggccggaccgttagcctgagtaaaacttagggcttgggctcaaaaatttcagcccgaatttttctagggc 38986636  T
Q  223 tttttagcccggcccgaaaaagcccg 248  Q
    ||||||||||||||||||||||||||    
T  38986635 tttttagcccggcccgaaaaagcccg 38986610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 162 - 260
Target Start/End: Original strand, 31230266 - 31230364
Alignment:
Q  162 gaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgttcgg 260  Q
    |||| ||||||||||| | ||||||||||| ||| |  || ||||||||||||| |||| ||||||||||||||||| |||| |||||| || ||||||    
T  31230266 gaaagcccgaataaaacgcagggcctgggccgaaaagctggagcccgaatttttccagggctttttagcccggcccgtaaaatcccgtaaccagttcgg 31230364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 3296166 - 3296226
Alignment:
Q  197 aattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||| ||||    
T  3296166 aattgcagcccgaattgtttcagggctttttagcccggcccaaaaaagcccggagctcgtt 3296226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 123 - 213
Target Start/End: Original strand, 74953 - 75043
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattt 213  Q
    |||||||||||||| |||| || || || ||| |||||||||| ||||||||||| ||||||| |||||  || |||||||||||| ||||    
T  74953 tagagctgtcaaaacgggctagcccatatgggtcggtccgaaagcccgaataaaacgtagggcttgggcctaaaaattgcagcccgtattt 75043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 36866160 - 36866217
Alignment:
Q  193 gaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgta 250  Q
    |||||| ||||||||||||||||||||| ||||||| |||| |||| |||||||||||    
T  36866160 gaataagtgcagcccgaattttttcagggctttttatcccgacccgtaaaagcccgta 36866217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 1845416 - 1845468
Alignment:
Q  123 tagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataa 175  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| |||||||||    
T  1845416 tagagctgtcaaaatgggccgggccgtaagggccggcccgaaagcccgaataa 1845468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 4975876 - 4975792
Alignment:
Q  173 taaaatgtagggcctgggctgaataattgcagcccgaattttttcaggactttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||| ||||||  |||||  |||||||| ||| |||||||||  | ||||||||||||||| ||||||||||||| || |||||    
T  4975876 taaaacgtagggtttgggcctaataattgtagctcgaatttttctaagactttttagcccggtccgaaaaagcccggagtccgtt 4975792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 122 - 257
Target Start/End: Complemental strand, 16770 - 16635
Alignment:
Q  122 ctagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttttcagga 221  Q
    ||||||||||||||||||||| ||||||| || |||||| |||| ||||||||||||||||||| ||||| ||||||||| |||||||| ||    |||     
T  16770 ctagagctgtcaaaatgggccgggccgtaaggtccggtctgaaagcccgaataaaatgtagggcttgggccgaataattgtagcccgaaattgaagaggg 16671  T
Q  222 ctttttagcccggcccgaaaaagcccgtagcccgtt 257  Q
    ||||||||||||||||| |||||||| | |||||||    
T  16670 ctttttagcccggcccgtaaaagcccttggcccgtt 16635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1449 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1449
Description:

Target: scaffold1449; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 1680 - 1585
Alignment:
Q  120 aactagagctgtcaaaatgggccaggccgtacgggccggtccgaaaacccgaataaaatgtagggcctgggctgaataattgcagcccgaattttt 215  Q
    ||||||||||||||||| ||||| | ||||| ||||||| |||||| ||||||||||||||||||  |||||| |||||||  |||||||||||||    
T  1680 aactagagctgtcaaaacgggccggcccgtatgggccggcccgaaagcccgaataaaatgtagggtttgggcttaataattttagcccgaattttt 1585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 56193 - 56230
Alignment:
Q  121 actagagctgtcaaaatgggccaggccgtacgggccgg 158  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  56193 actagagctgtcaaaacgggccaggccgtatgggccgg 56230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University