View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16216_low_7 (Length: 544)
Name: NF16216_low_7
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16216_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 380
Target Start/End: Complemental strand, 30655324 - 30654943
Alignment:
| Q |
5 |
accaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatccacctttaaaaccccttaa |
104 |
Q |
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| T |
30655324 |
accaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactccacctttaaaaccccttaa |
30655225 |
T |
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| Q |
105 |
gagctaataccacccaaaagatgcaaccaccaca------cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaa |
198 |
Q |
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| T |
30655224 |
gagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaagccaccgtaacaaccccaa |
30655125 |
T |
|
| Q |
199 |
aacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||| ||||| |||| |
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| T |
30655124 |
aacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatccaaaaaaacgtatattaacacctctgttcctcttcc |
30655025 |
T |
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| Q |
299 |
catcccttttacaaaacactaccaccaacaaaagcccctgagcattgtcggagacgtgaaaccacggcggtgccattccagc |
380 |
Q |
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| T |
30655024 |
catcccttttacaaaacactaccaccaacaacagcccctgagcattgtcggagacgtgaaaccacggcggtgccattccagc |
30654943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 443 - 525
Target Start/End: Complemental strand, 30654877 - 30654795
Alignment:
| Q |
443 |
cgaccaccgcggcgatgcctacagtggttttgaggactttctacgaacccacttaaattgtgcatgagctttaccgaagcaga |
525 |
Q |
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| T |
30654877 |
cgaccaccgcggcgatgccgactatggttttgaggactttctatgaacccacttaaaccgtgcatgagctttaccgaagcaga |
30654795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 139 - 374
Target Start/End: Complemental strand, 38929003 - 38928769
Alignment:
| Q |
139 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
238 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||| |
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| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
|
| Q |
239 |
caagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctg |
338 |
Q |
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| T |
38928903 |
caagaccctccaccaaaacaaatcc-aaaaaacgaatagcaacacctatgttcctcttcccatcctttttacaaaacactacccctagcaaaagccacag |
38928805 |
T |
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| Q |
339 |
agcattgtcggagacgtgaaaccacggcggtgccat |
374 |
Q |
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| T |
38928804 |
accattgtcggacacgctaaaccacggcggtgccat |
38928769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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