View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16216_low_8 (Length: 530)

Name: NF16216_low_8
Description: NF16216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16216_low_8
NF16216_low_8
[»] chr1 (5 HSPs)
chr1 (19-523)||(8813445-8813934)
chr1 (129-319)||(235886-236076)
chr1 (162-314)||(229858-230010)
chr1 (137-380)||(250568-250811)
chr1 (132-244)||(4440661-4440773)
[»] chr3 (14 HSPs)
chr3 (127-296)||(9341533-9341699)
chr3 (155-255)||(9403059-9403159)
chr3 (183-289)||(9370461-9370567)
chr3 (155-255)||(9421298-9421398)
chr3 (185-258)||(9348838-9348911)
chr3 (131-298)||(9344639-9344803)
chr3 (162-299)||(9494028-9494165)
chr3 (128-235)||(9625696-9625803)
chr3 (168-240)||(9433723-9433795)
chr3 (117-233)||(9645575-9645691)
chr3 (131-235)||(9654582-9654686)
chr3 (128-298)||(9449095-9449259)
chr3 (155-216)||(9441015-9441076)
chr3 (128-285)||(9613061-9613218)
[»] chr2 (1 HSPs)
chr2 (135-258)||(20693476-20693599)
[»] chr5 (1 HSPs)
chr5 (195-288)||(18571864-18571957)
[»] scaffold0038 (2 HSPs)
scaffold0038 (128-255)||(20300-20427)
scaffold0038 (128-255)||(20444-20571)
[»] chr6 (9 HSPs)
chr6 (128-255)||(28177179-28177306)
chr6 (128-255)||(28219802-28219929)
chr6 (133-223)||(7052957-7053047)
chr6 (128-255)||(28177035-28177162)
chr6 (128-255)||(28219946-28220073)
chr6 (137-223)||(7026618-7026704)
chr6 (153-255)||(28133077-28133179)
chr6 (128-255)||(28132933-28133060)
chr6 (134-223)||(7042334-7042423)
[»] scaffold0455 (1 HSPs)
scaffold0455 (128-255)||(10839-10966)


Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 523
Target Start/End: Original strand, 8813445 - 8813934
Alignment:
Q  19 atggtgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaactgtagcaggttatgactgtggctctgattgttcatccacagcc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8813445 atggtgtgtcaaaatgcttaaatgtcgtgtttaagatgactaaataagatcatgaaatgtagcaggttatgactgtggctctgattgttcatccacagcc 8813544  T
Q  119 atggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813545 atggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaa 8813644  T
Q  219 tttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccat 318  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||              |||||||||||||    
T  8813645 tttgtaccaattggcattcttcttccatcccaaatcaccaccgtaacattttaaccatcaaattcccact-at--------------acattgattccat 8813729  T
Q  319 cacaaataaaactccattctctgatctctccaaacacggtttcttcctcatcaaatcaccaccacaatccctaattcatccttggttgactaaaataaca 418  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813730 cacaaacaaaactccattctctgatctctccaaacacggtttcttcatcatcaaatcaccaccacaatccctaattcatccttggttgactaaaataaca 8813829  T
Q  419 caaaactccactggaaaaatcaaacactacctcccactccgccgacattcctcaccttctccttctcccgtctttgatttcaacaacttctctctcattc 518  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8813830 caaaactccactggaaaaatcaaacactacctcccattccgccgacattcctcaccttctccttctcccgtctttgatttcaacaacttctctctcattc 8813929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 129 - 319
Target Start/End: Complemental strand, 236076 - 235886
Alignment:
Q  129 aggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 228  Q
    ||||||| |||||| |||||||| |||| ||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  236076 aggcagattggtctaaactgccaaaggatcttctgaatcttatatcaaaacaaattgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaa 235977  T
Q  229 ttggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatc 319  Q
    |||||||||||||||||| || |||||||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||    
T  235976 ttggcgttcttcttccatcccgaatcaccaccgtgacatgttaaccatcaatttcccactcatcaaattcccactcaacattggttccatc 235886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 162 - 314
Target Start/End: Complemental strand, 230010 - 229858
Alignment:
Q  162 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 261  Q
    ||||||||||||||  || | ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  230010 tgaatctgatatcgtgacgaatcgacaacgaaatcgatatcattcgcttccgatcaatctgttccaattggcgttcttcttccatcccaaatcaccaccg 229911  T
Q  262 taacattttaaccatcaaattcccactcatcaaattcccgctcaacattgatt 314  Q
    | |||| ||||||||||||||||||| | || ||| ||| |||||||||||||    
T  229910 tgacatgttaaccatcaaattcccacccttccaatccccactcaacattgatt 229858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 137 - 380
Target Start/End: Original strand, 250568 - 250811
Alignment:
Q  137 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgtt 236  Q
    ||||||||||| ||| | || ||| |||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||| ||| ||||||||||||    
T  250568 tggtctgaacttccaaacgaccttttgaatctgatatcgcaactattcgacaacaaaatcgatctcaatagcttccgatcaatatgttccaattggcgtt 250667  T
Q  237 cttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattcccgctcaacattgattccatcacaaataaaactccatt 336  Q
    || ||||||| |||||||| |||||||||||||| ||  |  | ||||||||| ||  |  |||  ||||||||||||||||||  || |   ||  |||    
T  250668 ctgcttccatcccaaatcagcaccgtaacatttttacacttcagttcccactcttccgacccccattcaacattgattccatcaacaacatctctgaatt 250767  T
Q  337 ctctgatctctccaaacacggtttcttcctcatcaaatcaccac 380  Q
    |  | | ||||| |||||||||||||||||||||||| ||||||    
T  250768 ccgtaacctctctaaacacggtttcttcctcatcaaaccaccac 250811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 4440773 - 4440661
Alignment:
Q  132 cagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattg 231  Q
    |||||||||||  ||| ||| ||||||||||  |||||||||| |||| | |||||   ||| ||||||||||||| |||||||||| |||| |||  ||    
T  4440773 cagactggtcttcactcccaaaggagcttctacatctgatatcccaacgactcgacgttgaactcgatctcattcgtttccgatcaacttgttccacatg 4440674  T
Q  232 gcgttcttcttcc 244  Q
    ||| |||||||||    
T  4440673 gcgctcttcttcc 4440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 127 - 296
Target Start/End: Complemental strand, 9341699 - 9341533
Alignment:
Q  127 ggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacc 226  Q
    ||||||| |||||||| |||| ||| |||| || || | |||||||||||||| | | |||| |||||||||||||||||| || ||||| |||||| ||    
T  9341699 ggaggcaaactggtctcaactcccaaaggatctactcactctgatatcgcaacgaattgacaccgaaatcgatctcattcgatttcgatccatttgttcc 9341600  T
Q  227 aattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaat 296  Q
    |||||||||||||| ||||| |||||||||||   |||||| ||| || |||||||||||||| ||||||    
T  9341599 aattggcgttcttcctccatcccaaatcacca---taacatcttacccttcaaattcccactcctcaaat 9341533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 9403159 - 9403059
Alignment:
Q  155 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 254  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| | |||||    
T  9403159 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcttcttccatccgaaatc 9403060  T
Q  255 a 255  Q
    |    
T  9403059 a 9403059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 9370567 - 9370461
Alignment:
Q  183 tcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaatt 282  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| ||||||||||||||||| | | | | || | ||||||||||    
T  9370567 tcgacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcaccatcttcaaacttcacccatcaaatt 9370468  T
Q  283 cccactc 289  Q
    |||||||    
T  9370467 cccactc 9370461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 9421398 - 9421298
Alignment:
Q  155 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatc 254  Q
    ||||||||||||||||||||||||| | ||  || ||||||||||||||||||||| |||||| ||||| ||||||||||||| |||||||| | |||||    
T  9421398 gagcttctgaatctgatatcgcaacgaatcaccaccgaaatcgatctcattcgctttcgatcagtttgttccaattggcgttcatcttccatccgaaatc 9421299  T
Q  255 a 255  Q
    |    
T  9421298 a 9421298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 9348911 - 9348838
Alignment:
Q  185 gacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcacca 258  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||| ||||| |||||||||||||||||    
T  9348911 gacaacgaaatcgatctcattcgttttcgatcaatttgttccaattggcgctcttcctccattccaaatcacca 9348838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 9344803 - 9344639
Alignment:
Q  131 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 230  Q
    ||||| ||||||||||| ||| |||| ||||| ||||| ||||||||||   ||||||| ||| | |||||||||||||| |||||  ||||| ||||||    
T  9344803 gcagattggtctgaactcccaaaggatcttctcaatcttatatcgcaacgcctcgacaatgaacttgatctcattcgctttcgatctgtttgttccaatt 9344704  T
Q  231 ggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 298  Q
    |||  ||||||||||| || ||||| ||   |||||||||| || | || ||||||||| ||||||||    
T  9344703 ggcactcttcttccatccccaatcatca---taacattttaccctttaagttcccactcctcaaattc 9344639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 9494028 - 9494165
Alignment:
Q  162 tgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccg 261  Q
    ||||||||||||| ||   | ||||||  |||||||||||||||||||| |||||| | |||  ||||||||| ||||||||||||| ||| ||||| |     
T  9494028 tgaatctgatatcacagggaatcgacactgaaatcgatctcattcgctttcgatcagtctgttgcaattggcgctcttcttccattcgaaagcaccatct 9494127  T
Q  262 taacattttaaccatcaaattcccactcatcaaattcc 299  Q
    |||||||||| || || |||| |||||| |||||||||    
T  9494128 taacattttacccttcgaatttccactcttcaaattcc 9494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 235
Target Start/End: Original strand, 9625696 - 9625803
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||| |||||||||||| || ||| |||||||| ||||| |||| ||||||  | | |||| ||||||||||||||| ||||| |||||  ||||| |||    
T  9625696 gaggtagactggtctgatctcccaaaggagcttttgaatatgatttcgcaaagaattgacatcgaaatcgatctcatacgctttcgatctgtttgttcca 9625795  T
Q  228 attggcgt 235  Q
    ||||||||    
T  9625796 attggcgt 9625803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 9433795 - 9433723
Alignment:
Q  168 tgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttc 240  Q
    |||| ||||||| | ||||||  ||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  9433795 tgatttcgcaacgaatcgacactgaaattgatctcattcgcttccgatcagtttgttcccattggcgttcttc 9433723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 9645575 - 9645691
Alignment:
Q  117 ccatggaggaggaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 216  Q
    |||||| || |||||||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| ||||||| || | |||||||| |||||    
T  9645575 ccatggcggcggaggcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcaatatgattcgctttcgatc 9645674  T
Q  217 aatttgtaccaattggc 233  Q
      ||||| |||||||||    
T  9645675 ggtttgttccaattggc 9645691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 9654582 - 9654686
Alignment:
Q  131 gcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaatt 230  Q
    |||||||||||||| || ||  |||||||||||||| |||| ||  ||| | |||||| |||||||||| | |||||||| |||||  ||||| ||||||    
T  9654582 gcagactggtctgatctcccgaaggagcttctgaatatgatctcagaacgaatcgacatcgaaatcgatatgattcgctttcgatcggtttgttccaatt 9654681  T
Q  231 ggcgt 235  Q
    |||||    
T  9654682 ggcgt 9654686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 298
Target Start/End: Complemental strand, 9449259 - 9449095
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||| ||||| |||    ||||||| ||| ||||||||||||| || |||||| ||||| |||    
T  9449259 gaggcagattggtctcaactcccaaaggaacttctcaatctcatatcacaaaggctcgacaatgaactcgatctcattcgttttcgatcagtttgttcca 9449160  T
Q  228 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccactcatcaaattc 298  Q
     ||||   |   ||||||| |||||||| ||   |||||||||| || |||||||||||||| ||||||||    
T  9449159 tttgg---tgcacttccatcccaaatcatca---taacattttacccttcaaattcccactcctcaaattc 9449095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 9441015 - 9441076
Alignment:
Q  155 gagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatc 216  Q
    |||||||| |||||||||||||||| | ||||| | ||| ||||||||||||| || |||||    
T  9441015 gagcttctaaatctgatatcgcaacgaatcgacgatgaactcgatctcattcgttttcgatc 9441076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 285
Target Start/End: Original strand, 9613061 - 9613218
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||| ||||||||||||||| ||  | || ||||||||||| ||||| |||    | ||||||||| |||| || ||||  || |||||||||||| | |    
T  9613061 gaggtagactggtctgaacttcctaaagaacttctgaatctcatatcacaatgcattgacaacgaactcgaccttattcattttcgatcaatttgttcaa 9613160  T
Q  228 attggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattccc 285  Q
      ||||| ||||| ||||| |||||||||||  ||||||| | | || ||||||||||    
T  9613161 cgtggcgctcttcctccatcccaaatcaccatagtaacatctcatccttcaaattccc 9613218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 135 - 258
Target Start/End: Original strand, 20693476 - 20693599
Alignment:
Q  135 actggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcg 234  Q
    ||||||||||||||||  |||| |||||||||||||||||  ||||  |||||| |||| |||||||||||||||| |||||| ||||| ||||||||||    
T  20693476 actggtctgaactgccgaaggatcttctgaatctgatatccaaacacatcgacagcgaactcgatctcattcgctttcgatcagtttgttccaattggcg 20693575  T
Q  235 ttcttcttccattccaaatcacca 258  Q
    |||||| ||||| |||||||||||    
T  20693576 ttcttcctccatcccaaatcacca 20693599  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 288
Target Start/End: Complemental strand, 18571957 - 18571864
Alignment:
Q  195 tcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaatcaccaccgtaacattttaaccatcaaattcccact 288  Q
    |||||||||||||||||||||   ||||| |||| ||||||||||| ||||| |||||||| ||   |||||||||| || |||||||||||||    
T  18571957 tcgatctcattcgcttccgattggtttgtcccaaatggcgttcttcctccatcccaaatcatcattctaacattttacccttcaaattcccact 18571864  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 20300 - 20427
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  20300 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 20399  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    ||||||  |||||||| | |||||||||    
T  20400 attggcactcttcttcaactccaaatca 20427  T

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Target: scaffold0038; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 20571 - 20444
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  20571 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 20472  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    |||| |  |||||||| |||||||||||    
T  20471 attgacactcttcttctattccaaatca 20444  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 28177306 - 28177179
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || ||||   || || |||    
T  28177306 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatatgttcgttcca 28177207  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    |||| |  ||||||||||||||||||||    
T  28177206 attgacactcttcttccattccaaatca 28177179  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 28219802 - 28219929
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||||  || |||||  ||| | |||    
T  28219802 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcattcattttcgatctgtttattcca 28219901  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    ||||||  |||||||| | |||||||||    
T  28219902 attggcactcttcttcaactccaaatca 28219929  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 7053047 - 7052957
Alignment:
Q  133 agactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 223  Q
    |||||||||| |||| |||  ||||||||| ||||||||||| |||| | | ||| | ||||||||| |||||||||||||||||| ||||    
T  7053047 agactggtctaaactcccaacggagcttctcaatctgatatcacaacgaattgacgatgaaatcgatttcattcgcttccgatcaacttgt 7052957  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 28177035 - 28177162
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||| | | || ||| |||| ||||| ||||||||||| |||||| ||||||  ||| ||||||||||| | || |||||  ||||| |||    
T  28177035 gaggcagattggtatcagcttccaaaggatcttctcaatctgatatcacaacaactcgacagtgaagtcgatctcatttgttttcgatctgtttgttcca 28177134  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    ||||||  |||||||| | |||||||||    
T  28177135 attggcactcttcttcaactccaaatca 28177162  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 28220073 - 28219946
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| | || ||| |||| ||||| ||||||||||| |||| | ||||||| ||| ||||||||||||| || |||||  || ||  ||    
T  28220073 gaggcagattggtctcagcttccaaaggatcttctcaatctgatatcacaacgactcgacaatgaactcgatctcattcgttttcgatctgttcgtttca 28219974  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    |||| |  |||||||| |||||||||||    
T  28219973 attgacactcttcttctattccaaatca 28219946  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 7026704 - 7026618
Alignment:
Q  137 tggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 223  Q
    |||||| |||| |||  ||||||||| |||||||||||||||| | || || | ||| |||||||||||| |||||||||| |||||    
T  7026704 tggtctaaactcccaacggagcttctcaatctgatatcgcaacgaatctacgaagaagtcgatctcattcacttccgatcagtttgt 7026618  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 28133179 - 28133077
Alignment:
Q  153 aggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtaccaattggcgttcttcttccattccaaa 252  Q
    |||| ||||| ||||||||||| |||| | ||| ||| ||| |||||| |||||| ||  ||||| |||||  ||||||||  |||||||||||||||||    
T  28133179 aggatcttctcaatctgatatcacaacgactcggcaatgaactcgatcacattcgtttttgatcagtttgtttcaattggcactcttcttccattccaaa 28133080  T
Q  253 tca 255  Q
    |||    
T  28133079 tca 28133077  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 28132933 - 28133060
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  28132933 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 28133032  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    ||| | | |||||||| | |||||||||    
T  28133033 atttgagctcttcttcaactccaaatca 28133060  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 7042423 - 7042334
Alignment:
Q  134 gactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgt 223  Q
    ||||||||| |||| |||  ||||||||| ||||||||||| |||| | |||| || ||| | ||||||||||| || | ||||||||||    
T  7042423 gactggtctaaacttccaacggagcttctcaatctgatatcacaacgaatcgataatgaagttgatctcattcgatttcaatcaatttgt 7042334  T

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Target: scaffold0455 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 10839 - 10966
Alignment:
Q  128 gaggcagactggtctgaactgccacaggagcttctgaatctgatatcgcaacaattcgacaacgaaatcgatctcattcgcttccgatcaatttgtacca 227  Q
    |||||||| |||||| |||| ||| |||| ||||| ||||||||||| |||| | ||| ||| ||| | ||||||||||| |  |||||  ||||| |||    
T  10839 gaggcagattggtctcaacttccaaaggatcttctcaatctgatatctcaacgactcgtcaatgaacttgatctcattcgttatcgatctgtttgttcca 10938  T
Q  228 attggcgttcttcttccattccaaatca 255  Q
    ||| | | |||||||| | |||||||||    
T  10939 atttgagctcttcttcaactccaaatca 10966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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