View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_high_12 (Length: 303)
Name: NF16217_high_12
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 58 - 285
Target Start/End: Complemental strand, 25538135 - 25537908
Alignment:
| Q |
58 |
taaggaagctatagagtcttatgagtcttatgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggt |
157 |
Q |
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| T |
25538135 |
taaggaagctatagagtcttatgagtcttttgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttgaagattttaaacaaaatggt |
25538036 |
T |
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| Q |
158 |
tgatcgttgtttcaaggtggttgcaaccttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaa |
257 |
Q |
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| T |
25538035 |
tgatcgttgtttcaaggtggttgcaaccttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaa |
25537936 |
T |
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| Q |
258 |
atgggagaacaattacccgtgccagacc |
285 |
Q |
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| T |
25537935 |
atgggagaacaattacccgtgccagacc |
25537908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 257
Target Start/End: Complemental strand, 25544391 - 25544220
Alignment:
| Q |
86 |
tatgactttgattgatgcgtatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggttgatcgttgtttcaaggtggttgcaacc |
185 |
Q |
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| T |
25544391 |
tatgtctttgattgacgcatgtttgaaagtcaatagcattgatgatgctttgaggattttaaacaagatggtggatgttggtatcaaggtggacacgccc |
25544292 |
T |
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| Q |
186 |
ttggccaacagagtgtttaatgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaa |
257 |
Q |
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| T |
25544291 |
tctagcaacagggtgtttggcaaattgattaagaatggtaaagttatggactgtgcacacattttgagcaaa |
25544220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 43224237 - 43224394
Alignment:
| Q |
105 |
tatttgaaagtcgataagattgacgatgctttaaagattttaaacaaaatggttgatcgttgtttcaaggtggttgcaaccttggccaacagagtgttta |
204 |
Q |
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||||||||||| | ||| ||||| |||||||| | | | || ||||| ||||| |||||| |||| | |||| ||| ||||| | ||| || || ||| |
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| T |
43224237 |
tatttgaaagtgggtaacattgatgatgctttgagggtatttaacaagatggtggatcgtggtttgagggtgactgctaccttcggcaatagggtttttg |
43224336 |
T |
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| Q |
205 |
atgaattgattaagaatggtaaagctatgaattgtgcacacattttgagcaaaatggg |
262 |
Q |
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| T |
43224337 |
atgaattgattaagaatggtaaagttattgagtgtgctcagattttgagcaaaatggg |
43224394 |
T |
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