View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16217_high_13 (Length: 296)

Name: NF16217_high_13
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16217_high_13
NF16217_high_13
[»] chr1 (3 HSPs)
chr1 (5-246)||(15741207-15741448)
chr1 (6-56)||(5424668-5424718)
chr1 (171-246)||(13092121-13092196)
[»] scaffold0758 (1 HSPs)
scaffold0758 (7-138)||(4763-4894)
[»] chr3 (3 HSPs)
chr3 (5-138)||(49321880-49322013)
chr3 (8-59)||(15086021-15086072)
chr3 (5-53)||(15267104-15267152)
[»] chr4 (4 HSPs)
chr4 (72-165)||(20133163-20133260)
chr4 (9-65)||(20135523-20135578)
chr4 (167-240)||(20133052-20133125)
chr4 (167-239)||(35850441-35850513)
[»] chr8 (1 HSPs)
chr8 (164-246)||(45311517-45311599)
[»] chr5 (2 HSPs)
chr5 (5-58)||(702900-702953)
chr5 (8-55)||(28096146-28096193)
[»] chr6 (7 HSPs)
chr6 (5-60)||(24207511-24207566)
chr6 (5-55)||(26590264-26590314)
chr6 (8-53)||(2576172-2576217)
chr6 (90-139)||(24207461-24207509)
chr6 (7-59)||(31140217-31140269)
chr6 (5-52)||(26260270-26260316)
chr6 (167-232)||(24207336-24207401)
[»] chr7 (4 HSPs)
chr7 (9-51)||(28592492-28592534)
chr7 (12-58)||(3126833-3126879)
chr7 (167-220)||(13280587-13280640)
chr7 (5-58)||(44895234-44895287)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 15741448 - 15741207
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttcttctacttccattattactttaagtctcttctccttgtttactaacaaatt 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15741448 tgagattgtcatcattcaaattttcattagattgttcaagattatcttcttctacttccattattactttaagtctcttctccttgtttactaacaaatt 15741349  T
Q  105 taagttcctacttttgtgattttgttaattctaacacttttttcccttccttttttcattatcatcacaataaattataactgggtcaacaaagtaataa 204  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15741348 taagttcttccttttgtgattttgttaattctaacacttttttcccttccttttttcattatcatcacaataaattataactgggtcaacaaagaaataa 15741249  T
Q  205 gttcatcactaacaaccacatcttcctttagaatttcagtaa 246  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  15741248 gttcatcactaacaaccacgtcttcctttagaatttcagtaa 15741207  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 5424718 - 5424668
Alignment:
Q  6 gagattgtcatcattcaaatttttattagattgttcaagattatcttcttc 56  Q
    |||||||| ||||||||||| || ||||||||||||||||| |||||||||    
T  5424718 gagattgtaatcattcaaatgttcattagattgttcaagatcatcttcttc 5424668  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 13092121 - 13092196
Alignment:
Q  171 acaataaattataactgggtcaacaaagtaataagttcatcactaacaaccacatcttcctttagaatttcagtaa 246  Q
    ||||||||||||||   ||||| ||||| | |||| |||| ||||||||||||||||||| ||| ||||| |||||    
T  13092121 acaataaattataaacaggtcagcaaagaactaagctcattactaacaaccacatcttccattaaaatttgagtaa 13092196  T

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Target: scaffold0758 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 4894 - 4763
Alignment:
Q  7 agattgtcatcattcaaatttttattagattgttcaagattatcttcttctacttccattattactttaagtctcttctccttgtttactaacaaattta 106  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||| ||||||| || |||||||||||||||||    
T  4894 agattgtcatcatttaaattttcattagattgttcaagattatcttcttttacttccatcattattttaaggctcttctactcgtttactaacaaattta 4795  T
Q  107 agttcctacttttgtgattttgttaattctaa 138  Q
     ||||  |||||||||||||||||||||||||    
T  4794 tgttctcacttttgtgattttgttaattctaa 4763  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 49322013 - 49321880
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttcttctacttccattattactttaagtctcttctccttgtttactaacaaatt 104  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||| |||  |||||| ||||||| ||  ||||||||||||||    
T  49322013 tgagattgtcatcattcaaattttcattagaatgttcaaggttatcttcttctactttcatcattgttttaagactcttctactcatttactaacaaatt 49321914  T
Q  105 taagttcctacttttgtgattttgttaattctaa 138  Q
    ||||||     |||||||||||||||||||||||    
T  49321913 taagttatcctttttgtgattttgttaattctaa 49321880  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 15086021 - 15086072
Alignment:
Q  8 gattgtcatcattcaaatttttattagattgttcaagattatcttcttctac 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  15086021 gattgtcatcattcaaattttcattagattgttcaagattatcttcatctac 15086072  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 15267104 - 15267152
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttc 53  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||    
T  15267104 tgagattgtcatcattcaaattttcattagattgttcaagattgtcttc 15267152  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 20133260 - 20133163
Alignment:
Q  72 tttaagtctcttctccttgtttactaacaaatttaagttcctacttttgtgattttgttaattctaacac----ttttttcccttccttttttcatta 165  Q
    |||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||||||    |||||||| |||| ||||||||||    
T  20133260 tttaagtctcttctacttgtttactaacaaatttaagttatcccttttgtgattttgttaattctaacactgttttttttcctttccctttttcatta 20133163  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 20135578 - 20135523
Alignment:
Q  9 attgtcatcattcaaatttttattagattgttcaagattatcttcttctacttccat 65  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||    
T  20135578 attgtcatcattcaaatttt-attagattcttcaagattatcttcttttacttccat 20135523  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 20133125 - 20133052
Alignment:
Q  167 catcacaataaattataactgggtcaacaaagtaataagttcatcactaacaaccacatcttcctttagaattt 240  Q
    |||||||||| ||| ||||||| ||||||||| |||||| |||| |||||| ||||||  ||||||||||||||    
T  20133125 catcacaatatattttaactggttcaacaaagaaataagctcattactaactaccacacattcctttagaattt 20133052  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 35850441 - 35850513
Alignment:
Q  167 catcacaataaattataactgggtcaacaaagtaataagttcatcactaacaaccacatcttcctttagaatt 239  Q
    |||| |||| |||||||| ||||||||||||| | ||| ||||| ||||||||| || ||| |||||| ||||    
T  35850441 catcccaatgaattataaatgggtcaacaaagaactaaattcattactaacaacaacgtctccctttaaaatt 35850513  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 45311599 - 45311517
Alignment:
Q  164 tatcatcacaataaattataactgggtcaacaaagtaataagttcatcactaacaaccacatcttcctttagaatttcagtaa 246  Q
    ||||||||||||||||||||||  ||||||||||| ||||| ||||| ||||||||||||  ||||||||||| ||| |||||    
T  45311599 tatcatcacaataaattataacaaggtcaacaaagaaataaattcattactaacaaccaccccttcctttagagtttaagtaa 45311517  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 702953 - 702900
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttcttcta 58  Q
    ||||||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  702953 tgagattgtcatcattcgaattttcattagattgttcaagattattttcttcta 702900  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 28096193 - 28096146
Alignment:
Q  8 gattgtcatcattcaaatttttattagattgttcaagattatcttctt 55  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||    
T  28096193 gattgtcatcattccaattttcattagattgttcaagattatcttctt 28096146  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 24207566 - 24207511
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttcttctact 60  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||    
T  24207566 tgagattgtcatcgttcaaatttttattagattgttcaagagtttcttcttttact 24207511  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 26590314 - 26590264
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttctt 55  Q
    ||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  26590314 tgagattttcatcattccaattttcattagattgttcaagattatcttctt 26590264  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 2576172 - 2576217
Alignment:
Q  8 gattgtcatcattcaaatttttattagattgttcaagattatcttc 53  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||    
T  2576172 gattgccatcattccaattttcattagattgttcaagattatcttc 2576217  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 24207509 - 24207461
Alignment:
Q  90 gtttactaacaaatttaagttcctacttttgtgattttgttaattctaac 139  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  24207509 gtttactaacaaatttaagttcc-ccttttgtgattttgttgattctaac 24207461  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 31140269 - 31140217
Alignment:
Q  7 agattgtcatcattcaaatttttattagattgttcaagattatcttcttctac 59  Q
    ||||||||||||||| |||||| ||| |||||||| |||| ||||||||||||    
T  31140269 agattgtcatcattccaattttcattggattgttcgagatcatcttcttctac 31140217  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 26260316 - 26260270
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatctt 52  Q
    |||||||||||||||||||| ||||||| |||||||| ||||||||||    
T  26260316 tgagattgtcatcattcaaaattttattcgattgttc-agattatctt 26260270  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 232
Target Start/End: Complemental strand, 24207401 - 24207336
Alignment:
Q  167 catcacaataaattataactgggtcaacaaagtaataagttcatcactaacaaccacatcttcctt 232  Q
    ||||||| || | ||||||| ||||||||||| ||||||||||| ||||| ||||||  |||||||    
T  24207401 catcacagtataatataactaggtcaacaaagaaataagttcattactaataaccaccccttcctt 24207336  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 28592492 - 28592534
Alignment:
Q  9 attgtcatcattcaaatttttattagattgttcaagattatct 51  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  28592492 attgtcatcattcaaattttcattagatttttcaagattatct 28592534  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 3126879 - 3126833
Alignment:
Q  12 gtcatcattcaaatttttattagattgttcaagattatcttcttcta 58  Q
    ||||||| |||||||||||||| |||||| ||||||| |||||||||    
T  3126879 gtcatcaatcaaatttttattaaattgtttaagattaacttcttcta 3126833  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 13280640 - 13280587
Alignment:
Q  167 catcacaataaattataactgggtcaacaaagtaataagttcatcactaacaac 220  Q
    |||||||||||||||||| | ||||||||||| | ||||| ||| |||||||||    
T  13280640 catcacaataaattataaattggtcaacaaagaactaagtccattactaacaac 13280587  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 44895287 - 44895234
Alignment:
Q  5 tgagattgtcatcattcaaatttttattagattgttcaagattatcttcttcta 58  Q
    ||||||| |||||||||||| ||| |||| ||||||||||| |||||| |||||    
T  44895287 tgagattatcatcattcaaaatttcattatattgttcaagagtatctttttcta 44895234  T

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