View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_high_18 (Length: 248)
Name: NF16217_high_18
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 40762584 - 40762354
Alignment:
| Q |
8 |
ttatgtgctgtttttggggctaaataatcacttaatcttaatttgtttcatgattttcaaacagcaggaaagcccagcgaactggtgtgtattctattca |
107 |
Q |
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| T |
40762584 |
ttatgtgctgtttttggggctaaataatcacttaatcttaatttgtttcatgattttcaaacagcaggaaagcccagcgaactggtgtgtattctattca |
40762485 |
T |
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| Q |
108 |
cttttgatacaacactcatttactttgtttgaatattgttcttgtagtatgtcttcaatttacaatataatataatataatttctttcatatgtttacag |
207 |
Q |
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| T |
40762484 |
cttttgatacaacactcatttactttgtttgaatattgttcttctagtatgtcttcaatttacaatataata-----taatttctttcatatgtttacag |
40762390 |
T |
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| Q |
208 |
cctagggccccaagcaaactttctgctttcatctca |
243 |
Q |
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| T |
40762389 |
cctagggccccaagcaaactttctgctttcttctca |
40762354 |
T |
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