View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16217_low_1 (Length: 835)

Name: NF16217_low_1
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16217_low_1
NF16217_low_1
[»] chr2 (15 HSPs)
chr2 (439-820)||(10695851-10696232)
chr2 (19-412)||(10696259-10696667)
chr2 (202-369)||(45203178-45203345)
chr2 (239-369)||(5867934-5868063)
chr2 (253-382)||(38308013-38308143)
chr2 (239-335)||(7268538-7268634)
chr2 (241-365)||(25314730-25314853)
chr2 (243-370)||(28185956-28186085)
chr2 (299-368)||(13019600-13019669)
chr2 (297-369)||(13378346-13378418)
chr2 (241-368)||(24510927-24511054)
chr2 (204-336)||(37267707-37267839)
chr2 (242-337)||(43050146-43050241)
chr2 (229-371)||(28816103-28816244)
chr2 (229-354)||(775012-775137)
[»] chr5 (11 HSPs)
chr5 (202-368)||(35323596-35323762)
chr5 (205-370)||(14872588-14872753)
chr5 (203-371)||(31859713-31859879)
chr5 (242-370)||(28503194-28503322)
chr5 (241-369)||(41149538-41149666)
chr5 (249-360)||(38290782-38290893)
chr5 (249-368)||(17223107-17223227)
chr5 (205-297)||(36183320-36183412)
chr5 (249-352)||(40491715-40491819)
chr5 (196-281)||(32177306-32177391)
chr5 (229-330)||(24235095-24235196)
[»] chr3 (19 HSPs)
chr3 (205-355)||(36692838-36692987)
chr3 (206-355)||(36679223-36679371)
chr3 (220-371)||(33513327-33513477)
chr3 (249-371)||(25123262-25123384)
chr3 (205-365)||(23771674-23771835)
chr3 (211-368)||(26665427-26665585)
chr3 (202-375)||(26263188-26263359)
chr3 (205-369)||(51203161-51203325)
chr3 (240-336)||(32808573-32808669)
chr3 (249-362)||(7925383-7925496)
chr3 (241-354)||(43751791-43751906)
chr3 (253-368)||(15462067-15462182)
chr3 (271-372)||(42110913-42111015)
chr3 (322-371)||(52110913-52110962)
chr3 (249-323)||(14338940-14339012)
chr3 (211-330)||(25838064-25838183)
chr3 (232-291)||(31188038-31188097)
chr3 (207-366)||(31219167-31219325)
chr3 (206-315)||(18395498-18395606)
[»] chr1 (14 HSPs)
chr1 (205-370)||(7439021-7439185)
chr1 (253-371)||(31767860-31767976)
chr1 (266-371)||(30527653-30527758)
chr1 (193-361)||(434920-435087)
chr1 (203-371)||(38091177-38091336)
chr1 (205-291)||(6950188-6950274)
chr1 (241-338)||(48779691-48779786)
chr1 (205-348)||(46939943-46940087)
chr1 (202-291)||(31577998-31578086)
chr1 (207-291)||(14118268-14118352)
chr1 (242-368)||(35814474-35814602)
chr1 (244-323)||(9425735-9425814)
chr1 (229-336)||(26614102-26614209)
chr1 (249-335)||(2749169-2749255)
[»] chr7 (13 HSPs)
chr7 (229-370)||(3255078-3255219)
chr7 (202-368)||(2391577-2391743)
chr7 (204-354)||(44453593-44453743)
chr7 (253-355)||(10381963-10382063)
chr7 (297-359)||(26971337-26971399)
chr7 (207-339)||(35356352-35356483)
chr7 (219-354)||(35424848-35424983)
chr7 (241-281)||(23750421-23750461)
chr7 (198-368)||(22713372-22713542)
chr7 (240-372)||(17115914-17116045)
chr7 (262-338)||(40379416-40379491)
chr7 (241-280)||(36416031-36416070)
chr7 (241-282)||(31459439-31459480)
[»] chr6 (13 HSPs)
chr6 (218-371)||(33240804-33240956)
chr6 (251-372)||(989529-989650)
chr6 (206-329)||(6978474-6978598)
chr6 (298-370)||(7591135-7591207)
chr6 (242-359)||(30525782-30525900)
chr6 (253-368)||(29389113-29389229)
chr6 (203-372)||(30522037-30522195)
chr6 (262-370)||(33148233-33148340)
chr6 (249-354)||(6359042-6359148)
chr6 (204-290)||(9330246-9330332)
chr6 (203-313)||(32826690-32826800)
chr6 (307-368)||(14713919-14713980)
chr6 (283-368)||(18500716-18500801)
[»] chr8 (10 HSPs)
chr8 (201-371)||(27157622-27157792)
chr8 (247-365)||(7229010-7229128)
chr8 (241-354)||(6030003-6030116)
chr8 (248-369)||(7685469-7685589)
chr8 (241-322)||(34098415-34098495)
chr8 (207-356)||(37507535-37507684)
chr8 (205-290)||(7632650-7632735)
chr8 (262-371)||(9045631-9045740)
chr8 (264-340)||(42183714-42183790)
chr8 (249-354)||(39039744-39039849)
[»] chr4 (11 HSPs)
chr4 (242-334)||(782361-782453)
chr4 (241-318)||(7257292-7257369)
chr4 (248-332)||(3664229-3664313)
chr4 (203-303)||(9603867-9603967)
chr4 (297-372)||(27317071-27317146)
chr4 (239-368)||(53689035-53689165)
chr4 (249-371)||(55301108-55301229)
chr4 (206-283)||(30441368-30441445)
chr4 (299-334)||(10156848-10156883)
chr4 (241-318)||(39791233-39791310)
chr4 (249-364)||(7257525-7257640)
[»] scaffold0071 (1 HSPs)
scaffold0071 (253-368)||(10-125)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 439 - 820
Target Start/End: Complemental strand, 10696232 - 10695851
Alignment:
Q  439 ctaagggacatagacatttcagttaacatcatcctttcaaacacagcagttgggtaagttaaagtgaccaatcagcacatacattagcacttccgcgcac 538  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10696232 ctaagggacatagacatttcagttaacatcatcctttctaacacagcaggtgggtaagttaaagtgactaatcagcacatacattagcacttccgcgcac 10696133  T
Q  539 agaagaagagaccctccacagtcttggttttatcaacttttgttgtgcaataacaagttgagggaattggtaaagatgcaaatgcttcaaagagtgaata 638  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10696132 agaagaagagaccctccacagtcttggttttatcaacttttgttgtgcaaaaacaagttgagggaattggtaaagatgcaaatgcttcaaagagtgaata 10696033  T
Q  639 aaattggcatttactgattcaacaatgagttattctagtacatcgaaaacctttttacataaattaccaatcccattagatcaaaatggcttacgtaact 738  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  10696032 aaattggcatttactgattcaacaatgagttattctagtacattgaaaacctttttacataaattaccaatcccattagatcaaaatggtttgcgtaact 10695933  T
Q  739 ctttaaaggttgaatacccttactttgtagttgctccacacttctttggagtagtgagtagccaagtgagtaataaccaatc 820  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10695932 ctttaaaggttgaatacccttactttgtagttgctccacacttctttggagtagtgagtagccaagtgagtaataaccaatc 10695851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 10696667 - 10696259
Alignment:
Q  19 tatagggttgatcattgacttgctatgttattcatttatccatcaaacaatatttgaaatcttttttgcatggatatttgaattgcaattgatgaagctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10696667 tatagggttgatcattgacttgctatgttattcatttatccatcaaacaatatttgaaatcttttttgcatggatatttgaattgcaattgatgaagctt 10696568  T
Q  119 tttacgtacaaggtaaattaagaagatgnnnnnnnncagtcattccaagtgattacttgaggccgaacgagttctttatttttggccattacttttctca 218  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10696567 tttacgtacaaggtaaattaagaagatgaaaaaaa-cagtcattccaagtgattacttgaggcccaacgagttctttatttttggccattacttttctca 10696469  T
Q  219 tcctatgaa----------------gttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    |||||||||                ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10696468 tcctatgaaattctcgccctatgaagttctcgcgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 10696369  T
Q  303 tgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaacaacctttcttttttggcaagtaaaaggtgcta 402  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||     
T  10696368 tgcagtttggattctaaaatccaaactgcatagggcacatgagaaactcatagggtgtgaaaagaaacaacctttcttttttggcaagtaaaaggtgctt 10696269  T
Q  403 aaagcccagc 412  Q
    ||||||||||    
T  10696268 aaagcccagc 10696259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 202 - 369
Target Start/End: Original strand, 45203178 - 45203345
Alignment:
Q  202 ggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttt 301  Q
    |||||||||||||||||   | ||| |||||||  | | ||||||| |||||||||||| ||||||||||| || |||||  |||||||| ||| |||||    
T  45203178 ggccattacttttctcacaatgtgaggttctcggacgccctattcggattctaaaatccgaaatatttcaatgtgtttttcgaggttttatgggattttt 45203277  T
Q  302 atgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaa 369  Q
    ||| ||||||||||||||||| | ||| ||||||| | | |||||||||||||||||| |||||||||    
T  45203278 atgtagttcggattctaaaattcgaacggcataggacgcgtgagaaactcatagggtgaaaaaagaaa 45203345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 239 - 369
Target Start/End: Original strand, 5867934 - 5868063
Alignment:
Q  239 ctctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggc 338  Q
    |||||||||| || |||||||  |||||||||||||| |||||| || ||||| | || ||||||||||||||||||||||||| | || || |||||||    
T  5867934 ctctattcgattt-taaaatctgaaatatttcaacgtgtttttggagattttatgtgggttttatgcagttcggattctaaaattcgaattgtatagggc 5868032  T
Q  339 acatgagaaactcatagggtggaaaaagaaa 369  Q
     | ||||||||||||||| ||  ||||||||    
T  5868033 gcgtgagaaactcataggatgagaaaagaaa 5868063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 382
Target Start/End: Complemental strand, 38308143 - 38308013
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactc 351  Q
    |||||||  |||| ||||||||| |||||||| ||||| |  |||| ||||||| |||||||||||| ||| ||||||||||| | |||| |||||| |     
T  38308143 taaaatctgaaatgtttcaacgtgtttttgaaagtttttatagggtgtttatgccgttcggattctataattcaaactgcataagacacacgagaaatta 38308044  T
Q  352 atagggtggaaaaagaaacaacctttctttt 382  Q
    ||||||||| ||||||||||| ||| |||||    
T  38308043 atagggtgggaaaagaaacaatcttgctttt 38308013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 239 - 335
Target Start/End: Complemental strand, 7268634 - 7268538
Alignment:
Q  239 ctctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatag 335  Q
    ||||||||| ||| |||||||| |||||||||||  ||||||| || |||||| | | ||||||||| ||||| |||||||||| ||||||||||||    
T  7268634 ctctattcggattataaaatccgaaatatttcaaaatatttttaaaagttttatgagatttttatgcggttcgaattctaaaattcaaactgcatag 7268538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 241 - 365
Target Start/End: Original strand, 25314730 - 25314853
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    ||||||| |||||||||||||||||| |||| ||| ||||   | |||||  ||| |||||||||||||||||||||||||||  || |||||| ||| |    
T  25314730 ctattcggattctaaaatccaaaatacttcatcgtgttttcagaagttttctgggctttttatgcagttcggattctaaaatctgaattgcataaggcgc 25314829  T
Q  341 atgagaaactcatagggtggaaaaa 365  Q
     |||| |||||||||||| ||||||    
T  25314830 gtgag-aactcatagggttgaaaaa 25314853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 243 - 370
Target Start/End: Original strand, 28185956 - 28186085
Alignment:
Q  243 attcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcgg--attctaaaatccaaactgcatagggcac 340  Q
    ||||||||| |||||||| ||||||||||| ||||||||  || ||||| || | || ||||| ||||||  |||||||||||| || |||||| | | |    
T  28185956 attcgaattataaaatccgaaatatttcaatgtattttttgagattttatggagattctatgctgttcggatattctaaaatccgaattgcatatgacgc 28186055  T
Q  341 atgagaaactcatagggtggaaaaagaaac 370  Q
     |||||| |||||||||||| |||||||||    
T  28186056 gtgagaatctcatagggtgggaaaagaaac 28186085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 13019669 - 13019600
Alignment:
Q  299 tttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    ||||||| |||||||||||| ||||||||||||||||| | ||||||||  |||||| |||| |||||||    
T  13019669 tttatgccgttcggattctataatccaaactgcataggacgcatgagaagttcatagagtgggaaaagaa 13019600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 13378418 - 13378346
Alignment:
Q  297 tttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaa 369  Q
    |||||||||| ||||||||||||||| |||| |||||||||    |||||| |||||||| ||||||||||||    
T  13378418 tttttatgcaattcggattctaaaattcaaattgcatagggtgtgtgagaacctcataggatggaaaaagaaa 13378346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 241 - 368
Target Start/End: Original strand, 24510927 - 24511054
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    ||||||| ||| |||||||  |||||||| |||||||||| || | ||||| ||| | ||||||| ||| | |||||| ||| | |||||||||||| ||    
T  24510927 ctattcggattttaaaatctgaaatatttaaacgtattttggaggtttttatgggatgtttatgccgtttgaattctataattcgaactgcatagggaac 24511026  T
Q  341 atgagaaactcatagggtggaaaaagaa 368  Q
      |||||| ||||||| || ||||||||    
T  24511027 gcgagaaattcataggttgaaaaaagaa 24511054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 336
Target Start/End: Original strand, 37267707 - 37267839
Alignment:
Q  204 ccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttat 303  Q
    |||||||||||  || | |||||  ||||||||  | ||||| | |||||||||||| |||||||| ||||| |||| | |||||||| | | |||||||    
T  37267707 ccattactttttccaccttatgagcttctcgtgtgccctatttggattctaaaatccgaaatattttaacgtgttttgggaggttttatgagatttttat 37267806  T
Q  304 gcagttcggattctaaaatccaaactgcatagg 336  Q
     |||||| ||||||| ||||  || ||||||||    
T  37267807 acagttcagattctataatctgaaatgcatagg 37267839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 43050146 - 43050241
Alignment:
Q  242 tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcataggg 337  Q
    |||||| ||| |||||||  |||| ||||||||| |||| || | |||||| |||| ||||||  ||| |||||||| ||||| ||||||||||||    
T  43050146 tattcggattttaaaatctgaaatgtttcaacgtgttttggaggtttttacagggtatttatgtcgtttggattctataatccgaactgcataggg 43050241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 371
Target Start/End: Complemental strand, 28816244 - 28816103
Alignment:
Q  229 ttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaac 328  Q
    ||||||||| | |||||| |||| ||||||   ||||||||||||||  ||||| ||||||||  || || || |||| |||  ||| |||||| |||||    
T  28816244 ttctcgtgcgccctattcaaattataaaattttaaatatttcaacgt-gttttggaggttttataggattcttgtgcaattcaaattttaaaattcaaac 28816146  T
Q  329 tgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    || ||| ||||| ||||||||| ||| ||||  ||||||||||    
T  28816145 tgtataaggcacgtgagaaacttataaggtgagaaaagaaaca 28816103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 775012 - 775137
Alignment:
Q  229 ttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaac 328  Q
    ||||||||| ||||||||  ||| |||| |||||||| |||||||   |||| || | ||||| ||||| ||||| |  ||||||||||| |||| ||||    
T  775012 ttctcgtgcgctctattcatattttaaattccaaaatgtttcaacacgttttggaggtttttatggggtatttattccattcggattctataatctaaac 775111  T
Q  329 tgcatagggcacatgagaaactcata 354  Q
    |  ||||| | | |||||||||||||    
T  775112 tttataggacgcgtgagaaactcata 775137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 2e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 202 - 368
Target Start/End: Original strand, 35323596 - 35323762
Alignment:
Q  202 ggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttt 301  Q
    |||||||||||||| || | |||||  |||||||||   ||||||  |||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  35323596 ggccattacttttcccaccttatgagattctcgtgcgtcctattcagattctaaaatccgaaatatttcaacgtatttttgaaggttttacagggttttt 35323695  T
Q  302 atgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    |||||||||||||||||| || | |||||||| || | | ||| || |||||||| |||||||||||    
T  35323696 atgcagttcggattctaacatacgaactgcatgggacgcctgaaaatctcataggatggaaaaagaa 35323762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 205 - 370
Target Start/End: Original strand, 14872588 - 14872753
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatg 304  Q
    ||||||||||| || ||||| | |||||||||| |||| ||  |||||||||||||||||||||||||||| |||||  ||||||||  ||||||||||     
T  14872588 cattacttttcccaccctattaggttctcgtgcgctctgtttaaattctaaaatccaaaatatttcaacgtgtttttagaggttttatagggtttttata 14872687  T
Q  305 cagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaac 370  Q
     |||||||||||||||||||||| |||||||||| ||  | ||| ||||||||||| |||||||||    
T  14872688 tagttcggattctaaaatccaaattgcatagggcgcagaaaaaaatcatagggtgggaaaagaaac 14872753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 203 - 371
Target Start/End: Original strand, 31859713 - 31859879
Alignment:
Q  203 gccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    ||||||||||||  |||| |||||  ||||||||| | ||||||| | |||||||||| ||||||| |||| |||||||| || ||||| ||||||||      
T  31859713 gccattacttttgccatcttatgagcttctcgtgcgccctattcggactctaaaatccgaaatattccaacttatttttggagattttatggggtttt-- 31859810  T
Q  303 tgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    ||||||| |||||||||||||| |||| |||| ||  | |||||| ||||||||||| |||||||||||    
T  31859811 tgcagtttggattctaaaatccgaactacatatggtgcgtgagaagctcatagggtgaaaaaagaaaca 31859879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 242 - 370
Target Start/End: Complemental strand, 28503322 - 28503194
Alignment:
Q  242 tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcaca 341  Q
    ||||||||||||||||||  ||||||||||||||||||| || | ||||| || || ||||||| ||||| ||| || ||||||||||||||||| | |     
T  28503322 tattcgaattctaaaatctgaaatatttcaacgtattttggaggtttttatggagtatttatgccgttcgaattttataatccaaactgcataggacgcg 28503223  T
Q  342 tgagaaactcatagggtggaaaaagaaac 370  Q
    ||| ||||||||||| |||||||||||||    
T  28503222 tgaaaaactcataggatggaaaaagaaac 28503194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 241 - 369
Target Start/End: Original strand, 41149538 - 41149666
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    ||||| |||||||||||||||| |||||||| ||| |||||||| |||||| ||| ||||||||| ||||  |||||||||||| || |||||||||| |    
T  41149538 ctatttgaattctaaaatccaacatatttcatcgtgtttttgaaagttttatgggatttttatgcggttcaaattctaaaatccgaattgcatagggcgc 41149637  T
Q  341 atgagaaactcatagggtggaaaaagaaa 369  Q
     ||||||| | |||||||  |||||||||    
T  41149638 gtgagaaatttatagggttaaaaaagaaa 41149666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 249 - 360
Target Start/End: Original strand, 38290782 - 38290893
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    ||||||||||   ||| |||||||| | |||||| |||||||| ||||||||||| ||||| |||||||||||||  |||| ||||||||   ||||||     
T  38290782 attctaaaattagaaagatttcaacatgtttttggaggttttatggggtttttattcagtttggattctaaaatctgaactacatagggcgtgtgagaag 38290881  T
Q  349 ctcatagggtgg 360  Q
    ||||||||||||    
T  38290882 ctcatagggtgg 38290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 249 - 368
Target Start/End: Original strand, 17223107 - 17223227
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaa 347  Q
    |||||||||||  |||||||||||||| |||||| ||||||| | | ||| | ||| | |||||||||||| ||| |||||||||||||  ||| |||||    
T  17223107 attctaaaatctgaaatatttcaacgtgtttttgcaggtttttatgaggtgtgtatactgttcggattctataattcaaactgcataggagacacgagaa 17223206  T
Q  348 actcatagggtggaaaaagaa 368  Q
     ||||||||||  ||||||||    
T  17223207 gctcatagggtaaaaaaagaa 17223227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 36183320 - 36183412
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggt 297  Q
    ||||| ||||||||||||||||  ||||||||| |  |||||| |||||||||||| |||| ||||||| |||||| || | ||||| |||||    
T  36183320 cattagttttctcatcctatgagtttctcgtgcgccatattcggattctaaaatccgaaatgtttcaacatattttggaggtttttatggggt 36183412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 40491715 - 40491819
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaagg-ttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaa 347  Q
    ||||||||||||||||| ||||||||| |||||| ||| ||||| | ||| ||||||| |||  ||||||| ||||||||||   ||||||||  |||||    
T  40491715 attctaaaatccaaaatgtttcaacgtgtttttggaggtttttatgaggtgtttatgccgtttagattctataatccaaactatgtagggcacgcgagaa 40491814  T
Q  348 actca 352  Q
    |||||    
T  40491815 actca 40491819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 281
Target Start/End: Complemental strand, 32177391 - 32177306
Alignment:
Q  196 atttttggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtattttt 281  Q
    |||||||| ||||||||||||||||||||||  |||||   | | ||||||| |||||||||||  |||| ||| |||||||||||    
T  32177391 atttttggtcattacttttctcatcctatgagtttctcacacgccctattcgtattctaaaatctgaaatgttttaacgtattttt 32177306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 24235095 - 24235196
Alignment:
Q  229 ttctcgtgcactctattcgaattctaaaatcc-aaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaa 327  Q
    ||||||||| ||||||||| |||||||||||| ||||  ||| ||||| ||| || |||||||| |  || ||||||||||||||||| || ||||| ||    
T  24235095 ttctcgtgcgctctattcggattctaaaatcctaaaaagttttaacgtgtttctg-aggttttatgaagtgtttatgcagttcggattttataatccgaa 24235193  T
Q  328 ctg 330  Q
    |||    
T  24235194 ctg 24235196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 205 - 355
Target Start/End: Complemental strand, 36692987 - 36692838
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatg 304  Q
    |||||||||||||||| |||||  |||||| || ||||||| || ||||||||||  ||||||||||| |||||||||||| ||||||| ||||||||||    
T  36692987 cattacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtatttttgaagtttttacgaggtttttatg 36692888  T
Q  305 cagttcggattctaaaatccaaactgcatagggcacatgagaaactcatag 355  Q
    ||||| |||||||||||||| ||||||||||| ||| ||||||||| ||||    
T  36692887 cagtttggattctaaaatcc-aactgcataggacacgtgagaaacttatag 36692838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 206 - 355
Target Start/End: Complemental strand, 36679371 - 36679223
Alignment:
Q  206 attacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgc 305  Q
    ||||||||||||||| |||||  |||||| || ||||||| || ||||||||||  ||||||||||| || ||||||||| ||||||| |||||||||||    
T  36679371 attacttttctcatcatatgagcttctcgcgcgctctatttgagttctaaaatctgaaatatttcaatgtttttttgaagtttttacgaggtttttatgc 36679272  T
Q  306 agttcggattctaaaatccaaactgcatagggcacatgagaaactcatag 355  Q
    |||| |||||||||||||| ||||||||||| ||| ||||||||| ||||    
T  36679271 agtttggattctaaaatcc-aactgcataggacacgtgagaaacttatag 36679223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 220 - 371
Target Start/End: Complemental strand, 33513477 - 33513327
Alignment:
Q  220 cctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaa 319  Q
    |||||||  |||| |||||| ||||||| |||||||||||| |||||||||||||| |||| | ||||||||  ||||||||| | |||||||||| |||    
T  33513477 cctatgagtttcttgtgcaccctattcggattctaaaatcctaaatatttcaacgtgttttcggaggtttta-tgggtttttacgtagttcggattttaa 33513379  T
Q  320 aatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    |||   ||||| ||||||| | |||||| ||||||||||| |||||||||||    
T  33513378 aatttgaactgtatagggcgcgtgagaacctcatagggtgaaaaaagaaaca 33513327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 249 - 371
Target Start/End: Original strand, 25123262 - 25123384
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    ||||||||||||||||||||| ||||  |||||| ||||||||  ||||||||||||| ||||||||||||||||| | ||||||| | |   |||||||    
T  25123262 attctaaaatccaaaatattttaacgcgtttttggaggttttatagggtttttatgcacttcggattctaaaatccgatctgcataagacgagtgagaaa 25123361  T
Q  349 ctcatagggtggaaaaagaaaca 371  Q
    | |||||||||  ||||||||||    
T  25123362 cacatagggtgagaaaagaaaca 25123384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 365
Target Start/End: Original strand, 23771674 - 23771835
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaac--gtatttttgaaggttttacggggttttta 302  Q
    ||||||||||| || |||||||  || ||| || ||||||| | |||||||||||  ||||||||||||  || |||||| |||||||| || ||||| |    
T  23771674 cattacttttcgcaccctatgagcttatcgcgcgctctatttggattctaaaatcttaaatatttcaacatgtttttttggaggttttatggagtttt-a 23771772  T
Q  303 tgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaa 365  Q
    ||||||||| |||||||||| |||| ||||||| |||| |||||||||| || ||||| ||||    
T  23771773 tgcagttcgaattctaaaattcaaattgcatagagcacgtgagaaactcgtatggtgggaaaa 23771835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 211 - 368
Target Start/End: Complemental strand, 26665585 - 26665427
Alignment:
Q  211 ttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtattttt-gaaggttttacggggtttttatgcagtt 309  Q
    ||||| ||||||||||  |||||| ||   ||||| | ||| |||||||| |||||||||||| | ||||  |||  ||||| ||| | ||||||| |||    
T  26665585 ttttcccatcctatgagtttctcgcgcgtcctatttggattttaaaatccgaaatatttcaacatgttttccgaaatttttatgggttgtttatgccgtt 26665486  T
Q  310 cggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    ||||||||| ||| ||||||||||||||| |  |||||||||||| ||||| |||||||    
T  26665485 cggattctataattcaaactgcatagggcgcgcgagaaactcatatggtgggaaaagaa 26665427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 375
Target Start/End: Complemental strand, 26263359 - 26263188
Alignment:
Q  202 ggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttt 301  Q
    |||||||| ||||| ||||||||||| || ||  || |||||||  |||| |||||| |||||||||||||||| |||| || |||||||   |||| ||    
T  26263359 ggccattatttttc-catcctatgaaattttcacgcgctctatttaaattataaaattcaaaatatttcaacgtgttttaga-ggttttataaggttctt 26263262  T
Q  302 atgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaacaacct 375  Q
    |||||  |  ||||||||||||| |||||||||||  |||  ||||||||||  ||||  ||||||||||||||    
T  26263261 atgcaaattagattctaaaatccgaactgcataggatacagaagaaactcatgaggtgagaaaagaaacaacct 26263188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 205 - 369
Target Start/End: Complemental strand, 51203325 - 51203161
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttca-acgtatttttgaaggttttacggggtttttat 303  Q
    |||| ||||||||| | |||||  |||||| |||| |||||||||||||||| ||  |||||||||| |  | |||||| || ||||| ||| | |||||    
T  51203325 cattgcttttctcaccatatgagtttctcgcgcaccctattcgaattctaaagtctgaaatatttcagatttttttttggagattttatggg-tatttat 51203227  T
Q  304 gcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaa 369  Q
    |  |||||||||||| ||| | ||||||||| ||| || |||||||| ||||| ||||||||||||    
T  51203226 gttgttcggattctataattcgaactgcatatggcgcacgagaaactgataggatggaaaaagaaa 51203161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 240 - 336
Target Start/End: Original strand, 32808573 - 32808669
Alignment:
Q  240 tctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagg 336  Q
    |||||||| ||| ||||||||||||| ||| ||  |||||||| |||||||| | | |||||||||| |||| ||||||||||  ||||||||||||    
T  32808573 tctattcggattttaaaatccaaaattttttaatttatttttggaggttttatgagatttttatgcacttcgaattctaaaatataaactgcatagg 32808669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 7925383 - 7925496
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    |||||||||||  |||||||||||||||||||| |||||||||  |||| ||||| |  |||| |||||| | ||| ||| ||||||||| |  ||||||    
T  7925383 attctaaaatctgaaatatttcaacgtattttttaaggttttatagggtgtttataccattcgaattctatattccgaaccgcatagggcgcgcgagaaa 7925482  T
Q  349 ctcatagggtggaa 362  Q
    || ||||| |||||    
T  7925483 cttataggatggaa 7925496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 354
Target Start/End: Original strand, 43751791 - 43751906
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttt--tatgcagttcggattctaaaatccaaactgcatagggc 338  Q
    ||||||| ||||||||||| ||||||||| ||||| ||||||||| ||||| ||  ||||  |||  | || |||||||||||| ||||||||||| |||    
T  43751791 ctattcggattctaaaatctaaaatattttaacgtgtttttgaagattttaaggattttttatatatattttggattctaaaattcaaactgcataaggc 43751890  T
Q  339 acatgagaaactcata 354  Q
    ||  ||||| ||||||    
T  43751891 acgcgagaacctcata 43751906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 253 - 368
Target Start/End: Original strand, 15462067 - 15462182
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactca 352  Q
    |||||||  |||||||| ||||| |||| || | ||||| ||||| ||||||| ||| |||||||| ||| | ||||||||| ||  |  ||||||||||    
T  15462067 taaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 15462166  T
Q  353 tagggtggaaaaagaa 368  Q
    |||| |||||||||||    
T  15462167 taggttggaaaaagaa 15462182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 42111015 - 42110913
Alignment:
Q  271 aacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaa 369  Q
    ||||| |||||| ||||||| | ||||| ||||||  ||||| |||||| ||||||| ||||||||||| |  ||||||||| || | ||||||||||||    
T  42111015 aacgtgtttttggaggtttttatggggtgtttatgtcgttcgaattctataatccaacctgcatagggcgcgcgagaaactcgtaagatggaaaaagaaa 42110916  T
Q  370 caa 372  Q
    |||    
T  42110915 caa 42110913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 52110962 - 52110913
Alignment:
Q  322 tccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    |||||||||||||||||   ||||||||||||||| ||||||||||||||    
T  52110962 tccaaactgcatagggcgtgtgagaaactcataggatggaaaaagaaaca 52110913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 14338940 - 14339012
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatc 323  Q
    ||||| ||||||||||||||||||||| ||||   ||||||||   ||| |||||||||||| ||||||||||||    
T  14338940 attcttaaatccaaaatatttcaacgtgtttt--gaggttttataaggtatttatgcagttcagattctaaaatc 14339012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 330
Target Start/End: Original strand, 25838064 - 25838183
Alignment:
Q  211 ttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttc 310  Q
    |||| ||||||||| || || ||||||   ||||||  ||||||||||||||||||||||||| | ||||||| | |||||  || | | ||||  ||||    
T  25838064 ttttttcatcctataaatttttcgtgcgtcctattcagattctaaaatccaaaatatttcaacatgtttttgaggtttttataggctatctatgttgttc 25838163  T
Q  311 ggattctaaaatccaaactg 330  Q
    |||||||| |||| ||||||    
T  25838164 ggattctataatctaaactg 25838183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 31188097 - 31188038
Alignment:
Q  232 tcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttta 291  Q
    |||||| || |||||| |||||| |||| ||||||||||||| ||||||||||| |||||    
T  31188097 tcgtgcgctttattcggattctataatctaaaatatttcaacctatttttgaagttttta 31188038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 366
Target Start/End: Original strand, 31219167 - 31219325
Alignment:
Q  207 ttacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgca 306  Q
    ||||||||| || |||| ||| || |||||||  |||||| |||| |||||||  |||| ||||| | | |||| || ||||||| ||||  |||||||     
T  31219167 ttacttttcccaccctacgaatttatcgtgcatcctattcaaattttaaaatctgaaatgtttcagcatgttttgga-ggttttatggggagtttatgcc 31219265  T
Q  307 gttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaag 366  Q
    |||||||||||| ||||  ||||||||||| |||   ||||  ||||||||||| |||||    
T  31219266 gttcggattctataatctgaactgcataggacacgcaagaagttcatagggtgggaaaag 31219325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 315
Target Start/End: Original strand, 18395498 - 18395606
Alignment:
Q  206 attacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgc 305  Q
    |||| ||||| |||||||||| ||| ||| || | ||||| | ||||| |||||| ||||||||||| || ||| || ||||||||  || |||||||||    
T  18395498 attatttttcccatcctatga-gttttcgcgcgccctatttgtattctgaaatccgaaatatttcaatgtgtttgtggaggttttataggttttttatgc 18395596  T
Q  306 agttcggatt 315  Q
    |||| |||||    
T  18395597 agtttggatt 18395606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 7e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 205 - 370
Target Start/End: Complemental strand, 7439185 - 7439021
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatg 304  Q
    ||||||||||||||||||||||  |||||| ||   |||||| |||||||||||| ||||||||||||||| |||||||||||||||  ||| ||||||     
T  7439185 cattacttttctcatcctatgagattctcgcgcgtcctattcaaattctaaaatctaaaatatttcaacgtgtttttgaaggtttta-tgggattttata 7439087  T
Q  305 cagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaac 370  Q
    | ||||||||| |||||||| || | |||| ||| | |||||||||||||||||||||||||||||    
T  7439086 cggttcggattataaaatccgaattacataaggcgcgtgagaaactcatagggtggaaaaagaaac 7439021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 253 - 371
Target Start/End: Complemental strand, 31767976 - 31767860
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactca 352  Q
    |||||||| |||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||||||  ||||||||||| ||| |||||||| ||    
T  31767976 taaaatccgaaatatttcaacgtgtttttgaaagttttatgaggtttttatgcagtgcggattctaaaatctgaactgcataggacacgtgagaaacgca 31767877  T
Q  353 tagggtggaaaaagaaaca 371  Q
    |  | ||||||||||||||    
T  31767876 t--gatggaaaaagaaaca 31767860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 266 - 371
Target Start/End: Complemental strand, 30527758 - 30527653
Alignment:
Q  266 atttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaa 365  Q
    |||||||||| |||||| |||||||| ||| ||||||||| |||||||||||||||||||| ||||||||| | | |||||||| |||||| ||| ||||    
T  30527758 atttcaacgtgtttttggaggttttatgggttttttatgccgttcggattctaaaatccaatctgcataggacgcgtgagaaacacataggatgggaaaa 30527659  T
Q  366 gaaaca 371  Q
    ||||||    
T  30527658 gaaaca 30527653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 361
Target Start/End: Complemental strand, 435087 - 434920
Alignment:
Q  193 tttatttttggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttac 292  Q
    ||||||||||| ||||||||||   ||| |||||  |||||  || | ||||| || |||||||||| ||||||||||||| | ||||||||| ||||||    
T  435087 tttatttttggacattactttttctatcatatgagcttctcacgcgccctatttgagttctaaaatctaaaatatttcaacatgtttttgaagtttttac 434988  T
Q  293 ggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtgga 361  Q
    | |||||| |||||| |||||||||||||||| ||||||||||| | | ||| ||||| |||| |||||    
T  434987 gaggttttcatgcagctcggattctaaaatcc-aactgcataggacgcgtgaaaaacttatagagtgga 434920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 203 - 371
Target Start/End: Complemental strand, 38091336 - 38091177
Alignment:
Q  203 gccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    ||||||||||||| |||||| ||| ||||||| ||   ||||||  |||||||||| | |||||||||| ||| || |||||||||||          ||    
T  38091336 gccattacttttcacatcctgtgacgttctcgcgcgtcctattcagattctaaaattcgaaatatttcaccgtgttattgaaggtttt----------ta 38091247  T
Q  303 tgcagttcggattctaaaatccaaactgcatagggcaca-tgagaaactcatagggtggaaaaagaaaca 371  Q
    ||  |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||    
T  38091246 tgttgttcggattctaaaatccaaactgcatagggcgcagtgagaaactcatacggtggaaaaagaaaca 38091177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 6950188 - 6950274
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttta 291  Q
    |||||||||| ||||||||| |||||||||  |    |||||| |||||||||| |||||||||||||||||||||| || ||||||    
T  6950188 cattacttttttcatcctatcaagttctcgcacttattattcggattctaaaattcaaaatatttcaacgtatttttaaaagtttta 6950274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 338
Target Start/End: Original strand, 48779691 - 48779786
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggc 338  Q
    ||||||| |||||||||| | |||||||||||| | ||||||||||||||  | ||||||||| | ||||| |||||| |||| ||| ||||||||||    
T  48779691 ctattcggattctaaaattcgaaatatttcaacatgtttttgaaggtttt--gaggtttttattccgttcgaattctataatcaaaattgcatagggc 48779786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 348
Target Start/End: Original strand, 46939943 - 46940087
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggt-tttacggggtttttat 303  Q
    |||||| ||||||| |||||||| |||| ||| |  |||||||||||||||||||  |||| ||||||  | ||||||||||| ||||  |  | |||||    
T  46939943 cattacctttctcaccctatgaatttcttgtggatcctattcgaattctaaaatctgaaatgtttcaatatgtttttgaaggtctttatagattgtttat 46940042  T
Q  304 gcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    |  |||||||||||| ||||| ||||| ||||||| | |||||||    
T  46940043 gttgttcggattctataatccgaactgtatagggcgcgtgagaaa 46940087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 31578086 - 31577998
Alignment:
Q  202 ggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttta 291  Q
    |||| ||||||||| || |||||||  |||||| || | ||||| | |||||||||||| |||||||||||||| |||||| ||||||||    
T  31578086 ggccgttacttttccca-cctatgagcttctcgcgcgccctatttggattctaaaatccgaaatatttcaacgtgtttttggaggtttta 31577998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 14118352 - 14118268
Alignment:
Q  207 ttacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttta 291  Q
    ||||||||||||| ||||||| || || |||   ||||| ||||| |||||||| ||||||||||| || ||||||||| |||||    
T  14118352 ttacttttctcattctatgaacttttcatgcgtcctatttgaattttaaaatccgaaatatttcaatgtgtttttgaagatttta 14118268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 242 - 368
Target Start/End: Complemental strand, 35814602 - 35814474
Alignment:
Q  242 tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggt-tttacg-gggtttttatgcagttcggattctaaaatccaaactgcatagggca 339  Q
    |||||| ||||||||||||||||| ||| ||||| ||||||||||| |||| |   || ||||||  | || |||| |||||||  ||||||||||| |     
T  35814602 tattcggattctaaaatccaaaatgttttaacgtgtttttgaaggtgtttatgaatgtatttatgtcgatcagattataaaatctgaactgcataggacg 35814503  T
Q  340 catgagaaactcatagggtggaaaaagaa 368  Q
    |  |||||||||||||||| |||||||||    
T  35814502 cgcgagaaactcatagggtagaaaaagaa 35814474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 9425814 - 9425735
Alignment:
Q  244 ttcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatc 323  Q
    ||||||||||||||||| ||||||||||   | ||||| ||||||||| | | |||||||  |||||||||| |||||||    
T  9425814 ttcgaattctaaaatccgaaatatttcagtatgtttttaaaggttttatgagatttttatatagttcggattttaaaatc 9425735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 336
Target Start/End: Complemental strand, 26614209 - 26614102
Alignment:
Q  229 ttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgta--tttttgaaggttttacggggtttttatgcagttcggattctaaaatccaa 326  Q
    |||||| | |||||||||  ||| ||||||  |||||||||||||||   |||||||||  |||| |||||||||||| |||| |||||||| ||||| |    
T  26614209 ttctcgcgtactctattctgattttaaaatttaaaatatttcaacgtgcttttttgaag--tttatggggtttttatgtagtttggattctataatccga 26614112  T
Q  327 actgcatagg 336  Q
    ||| ||||||    
T  26614111 actacatagg 26614102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 335
Target Start/End: Complemental strand, 2749255 - 2749169
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatag 335  Q
    |||||||||||| |||| ||||||| | |||| || | ||||| ||||  ||||||  |||||||||||| |||||||| |||||||    
T  2749255 attctaaaatccgaaatgtttcaacttgttttggaggtttttatggggcatttatggtgttcggattctataatccaaattgcatag 2749169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 229 - 370
Target Start/End: Complemental strand, 3255219 - 3255078
Alignment:
Q  229 ttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaa 327  Q
    |||||| || ||||||||| ||||||||||| ||||||||||||  |||||||||||||||| | ||||| ||||||| |||| |||| || ||||| ||    
T  3255219 ttctcgcgcgctctattcggattctaaaatctaaaatatttcaatatatttttgaaggtttttatggggtgtttatgccgttctgattatataatccgaa 3255120  T
Q  328 ctgcatagggcacatgagaaactcatagggtggaaaaagaaac 370  Q
    |||||||| ||||| |||||||||||||||| |||||||||||    
T  3255119 ctgcatagagcacacgagaaactcatagggt-gaaaaagaaac 3255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 202 - 368
Target Start/End: Original strand, 2391577 - 2391743
Alignment:
Q  202 ggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttt 301  Q
    ||||||||||||| |||||||||||  |||||| || | ||||| | |||||||||||| |||||||||||| ||||||| ||||| ||  |||||||||    
T  2391577 ggccattacttttttcatcctatgagtttctcgcgcgcactatttggattctaaaatccgaaatatttcaacatattttttaaggtcttgtggggttttt 2391676  T
Q  302 atgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    ||||||||  |||||||||||   ||||||||| | |   |||||| |||||||| ||| |||||||    
T  2391677 atgcagtttagattctaaaatttgaactgcataagacgggtgagaacctcataggatgggaaaagaa 2391743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 204 - 354
Target Start/End: Original strand, 44453593 - 44453743
Alignment:
Q  204 ccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttat 303  Q
    ||||||||||| ||| ||||| |  ||||||| |   ||||||| |||||||||| | |||||||||||||| |||||| | |||||| || || |||||    
T  44453593 ccattacttttttcaccctataagtttctcgtacgtcctattcggattctaaaattcgaaatatttcaacgtgtttttggaagttttatggagtctttat 44453692  T
Q  304 gcagttcggattctaaaatccaaactgcatagggcacatgagaaactcata 354  Q
     |||||||||||||||||| | ||||| |||| || | |||||||||||||    
T  44453693 acagttcggattctaaaatgcgaactgtatagagcgcgtgagaaactcata 44453743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 253 - 355
Target Start/End: Complemental strand, 10382063 - 10381963
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactca 352  Q
    |||||||| ||| |||| ||||| ||||||||||||||| ||||||||||||  || ||||||||||||||||||||||||||| | | ||||||||| |    
T  10382063 taaaatccgaaa-attttaacgtgtttttgaaggttttatggggtttttatgtggt-cggattctaaaatccaaactgcataggacgcgtgagaaactta 10381966  T
Q  353 tag 355  Q
    |||    
T  10381965 tag 10381963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 26971399 - 26971337
Alignment:
Q  297 tttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtg 359  Q
    ||||||||||||||||||| |||||||  ||||||||||| ||| ||||||||||||||||||    
T  26971399 tttttatgcagttcggattttaaaatctgaactgcataggacacgtgagaaactcatagggtg 26971337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 207 - 339
Target Start/End: Complemental strand, 35356483 - 35356352
Alignment:
Q  207 ttacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgca 306  Q
    |||||||||||||||| |||  |||||||||   ||||| |||||||||||||| |||| ||| ||||| |||| || | ||||| |||| ||||| |      
T  35356483 ttacttttctcatcctttgagtttctcgtgcgtcctatttgaattctaaaatccgaaatgttttaacgtgttttggaggtttttatgggg-ttttacgtc 35356385  T
Q  307 gttcggattctaaaatccaaactgcatagggca 339  Q
    ||||||||| || ||||| ||||||||||||||    
T  35356384 gttcggattatataatccgaactgcatagggca 35356352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 219 - 354
Target Start/End: Complemental strand, 35424983 - 35424848
Alignment:
Q  219 tcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattcta 318  Q
    ||||||||  ||||||||| | ||| |||||||||||||||  |||||||| ||| |||||| || | ||||| | | | ||||||| |||| |||||||    
T  35424983 tcctatgagtttctcgtgcgccctaatcgaattctaaaatctgaaatattttaacatattttggaggtttttatgcgatgtttatgccgttcagattcta 35424884  T
Q  319 aaatccaaactgcatagggcacatgagaaactcata 354  Q
     |||||||||| |||||| | || |||||| |||||    
T  35424883 taatccaaactacataggacgcacgagaaattcata 35424848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 23750461 - 23750421
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtattttt 281  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  23750461 ctattcgaatgctaaaatccaaaatatttcaacgtattttt 23750421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 368
Target Start/End: Complemental strand, 22713542 - 22713372
Alignment:
Q  198 ttttggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaagg-ttttacgggg 296  Q
    ||||| |||||||||||  || | |||||  ||||||||| | ||||| ||||| |||||||  |||||||||||||| |||||| ||| |||||| |||    
T  22713542 ttttgaccattactttttccaccttatgagtttctcgtgcgc-ctatttgaattttaaaatctgaaatatttcaacgtgtttttggaggtttttacaggg 22713444  T
Q  297 tttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    | |||||||  |||||||| || |||| |||||  |||| |  | ||||||||||||| | ||| |||||||    
T  22713443 tgtttatgccattcggattttataatctaaactatatagagtgcgtgagaaactcataagatgggaaaagaa 22713372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 17115914 - 17116045
Alignment:
Q  240 tctattcgaattctaaaatccaaaatatttcaacgtatttttg-aaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggc 338  Q
    |||||| | ||| ||||||| ||||||||||||||| |||||| ||| ||||| ||||| ||||||  ||||| |||||| ||| |||||||| |||| |    
T  17115914 tctatttggattttaaaatctaaaatatttcaacgtgtttttgaaagtttttatggggtgtttatgtcgttcgaattctataatacaaactgcgtaggac 17116013  T
Q  339 acatgagaaactcatagggtggaaaaagaaacaa 372  Q
        ||||||||||||  ||| ||||||||||||    
T  17116014 gtgcgagaaactcata--gtgaaaaaagaaacaa 17116045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 40379491 - 40379416
Alignment:
Q  262 aaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggc 338  Q
    |||||||||||||| ||||| ||||||| |  ||||||||||| |||| |||||||||||||| ||||  |||||||    
T  40379491 aaatatttcaacgtgtttttaaaggttt-atagggtttttatgaagtttggattctaaaatccgaactatatagggc 40379416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 36416070 - 36416031
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttt 280  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  36416070 ctattcgaattttaaaatcctaaatatttcaacgtatttt 36416031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 31459439 - 31459480
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttg 282  Q
    |||||| |||| |||||||| |||||||||||||||||||||    
T  31459439 ctattcaaattttaaaatccgaaatatttcaacgtatttttg 31459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 2e-27; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 218 - 371
Target Start/End: Complemental strand, 33240956 - 33240804
Alignment:
Q  218 atcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattc 316  Q
    |||||||||  ||||||||| | ||||||| |||||||||||| ||||||||||||||  ||||||||||||| | ||||| ||||| ||||||||||||    
T  33240956 atcctatgagtttctcgtgcgccctattcggattctaaaatccgaaatatttcaacgt--ttttgaaggtttttatggggtatttatacagttcggattc 33240859  T
Q  317 taaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    |||||||||||||| |||||||    ||||| || ||||| ||| ||||||||||    
T  33240858 taaaatccaaactgtatagggcgtgcgagaagcttataggatgggaaaagaaaca 33240804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 989529 - 989650
Alignment:
Q  251 tctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaact 350  Q
    |||||||||  |||||||||||||| |||||| || ||||| |||| ||||||||||||||||||||||||||| |||| |||||||  |||||||| ||    
T  989529 tctaaaatctgaaatatttcaacgtgtttttggagattttatgggggttttatgcagttcggattctaaaatccgaactacatagggtgcatgagaagct 989628  T
Q  351 catagggtggaaaaagaaacaa 372  Q
    | ||||| || |||||||||||    
T  989629 cgtagggagggaaaagaaacaa 989650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 206 - 329
Target Start/End: Complemental strand, 6978598 - 6978474
Alignment:
Q  206 attacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgta-tttttgaaggttttacggggtttttatg 304  Q
    |||||||||  ||||||||||  |||||||||   ||||| | ||||||||||| |||||||||||||||| |||||| |||||||| || |||||||||    
T  6978598 attactttttccatcctatgagtttctcgtgcgtcctatttggattctaaaatctaaaatatttcaacgtaatttttggaggttttatggagtttttatg 6978499  T
Q  305 cagttcggattctaaaatccaaact 329  Q
    ||||| |||||||||||||| ||||    
T  6978498 cagtttggattctaaaatccgaact 6978474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 298 - 370
Target Start/End: Original strand, 7591135 - 7591207
Alignment:
Q  298 ttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaac 370  Q
    ||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||| |||||||||||||    
T  7591135 ttttatgcagttcggattctaaaatccaaactgcataggacgcttgagaagctcataggatggaaaaagaaac 7591207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 242 - 359
Target Start/End: Complemental strand, 30525900 - 30525782
Alignment:
Q  242 tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    |||||||||| || ||||| |||| ||||||||| |||||| ||||||| | | | | ||||||| |||||||||||| |||||||| ||||||||||      
T  30525900 tattcgaattatagaatccgaaatgtttcaacgtgtttttggaggtttttatgagatgtttatgccgttcggattctataatccaaattgcatagggcgt 30525801  T
Q  341 atgagaaactcatagggtg 359  Q
      |||||||||||||||||    
T  30525800 gcgagaaactcatagggtg 30525782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 253 - 368
Target Start/End: Complemental strand, 29389229 - 29389113
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaagg-ttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactc 351  Q
    |||||||| |||| ||||||||| |||||||||| |||||  |||| ||||||| ||||||||| || ||||| ||||| ||||| |    |||||||||    
T  29389229 taaaatccgaaatgtttcaacgtgtttttgaaggtttttattgggtgtttatgctgttcggattttataatccgaactgtataggacgtgcgagaaactc 29389130  T
Q  352 atagggtggaaaaagaa 368  Q
    ||||||||| |||||||    
T  29389129 atagggtgggaaaagaa 29389113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 203 - 372
Target Start/End: Complemental strand, 30522195 - 30522037
Alignment:
Q  203 gccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    ||||||||||||| || | ||||| ||||| |||  | ||||||| |||| ||||||| |||| |||  |||| |||||| |||||||| | ||||||||    
T  30522195 gccattacttttcccaccttatgaggttcttgtgtgccctattcggattccaaaatccgaaatgtttttacgtgtttttggaggttttatgaggttttta 30522096  T
Q  303 tgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaacaa 372  Q
    ||||||           ||||| |||||||||||||   ||||||||||| |||||||||||||||||||    
T  30522095 tgcagt-----------aatccgaactgcatagggcgtgtgagaaactcacagggtggaaaaagaaacaa 30522037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 262 - 370
Target Start/End: Complemental strand, 33148340 - 33148233
Alignment:
Q  262 aaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtgga 361  Q
    |||||||||||||| |||||| ||||||| |  | ||||||||||||| ||||| | ||||| ||||||||||||  ||  ||||||||||||||  |||    
T  33148340 aaatatttcaacgtgtttttggaggtttttcaagatttttatgcagttgggatt-ttaaatctaaactgcataggatacgggagaaactcataggtggga 33148242  T
Q  362 aaaagaaac 370  Q
    |||| ||||    
T  33148241 aaaaaaaac 33148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 6359042 - 6359148
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtattttt-gaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaa 347  Q
    ||||||||||||||||||||||||||||||||| || | ||||| || || || |||   || | |||||| ||||  ||||||||| |||||| |||||    
T  6359042 attctaaaatccaaaatatttcaacgtatttttggatgtttttatggagtgttaatgtcatttgaattctataatctgaactgcataaggcacacgagaa 6359141  T
Q  348 actcata 354  Q
    |||||||    
T  6359142 actcata 6359148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 9330332 - 9330246
Alignment:
Q  204 ccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt 290  Q
    ||||||||||| | | | |||||  |||||| || |||||||||||| || |||||| ||||||||||| || ||||||||||||||    
T  9330332 ccattactttttttaccttatgagtttctcgcgcgctctattcgaatgctgaaatccgaaatatttcaatgtgtttttgaaggtttt 9330246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 203 - 313
Target Start/End: Complemental strand, 32826800 - 32826690
Alignment:
Q  203 gccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    ||||||||||||  ||| ||||||  |||||| ||  |||||| ||||||||||||   |||||||||||||  |||||| |||||||| ||  ||||||    
T  32826800 gccattactttttccattctatgagtttctcgcgcgttctatttgaattctaaaattttaaatatttcaacgagtttttggaggttttatggaattttta 32826701  T
Q  303 tgcagttcgga 313  Q
    ||| |||||||    
T  32826700 tgcggttcgga 32826690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 14713919 - 14713980
Alignment:
Q  307 gttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    |||||||||||| |||||||||||||||| |||    ||||||||||||| |||||||||||    
T  14713919 gttcggattctataatccaaactgcatagagcaagcaagaaactcataggatggaaaaagaa 14713980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 18500716 - 18500801
Alignment:
Q  283 aaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaa 368  Q
    ||||||||| |||||||||||| ||||||||||| |||| || ||||| ||||| | | |||||| ||  |||| |||||||||||    
T  18500716 aaggttttatggggtttttatgtagttcggattcaaaaacccgaactgtataggacgcgtgagaagcttgtaggatggaaaaagaa 18500801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 6e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 201 - 371
Target Start/End: Complemental strand, 27157792 - 27157622
Alignment:
Q  201 tggccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttt 300  Q
    ||||||||||||||  || |||||||  |||||||||   ||||||| |||||||||||| || |||||||||||  ||||| || ||||| ||||| ||    
T  27157792 tggccattactttttccaccctatgagtttctcgtgcgtgctattcggattctaaaatccgaattatttcaacgtggttttggagattttatggggtatt 27157693  T
Q  301 tatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaaca 371  Q
    |||||  ||||||||||| ||||| || |||||||||| || || ||||| ||||||||| ||||||||||    
T  27157692 tatgccattcggattctataatccgaaatgcatagggcgcacgataaactgatagggtgggaaaagaaaca 27157622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 7229128 - 7229010
Alignment:
Q  247 gaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgaga 346  Q
    ||||||||||||   |||||||||||| | |||||||| |||||| ||| |||||||||||||  ||||||||||| | ||||||||| || || |||||    
T  7229128 gaattctaaaatttgaaatatttcaacatgtttttgaatgttttatgggatttttatgcagtttagattctaaaattcgaactgcataaggtacttgaga 7229029  T
Q  347 aactcatagggtggaaaaa 365  Q
    |||||||| ||||||||||    
T  7229028 aactcataaggtggaaaaa 7229010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 6030116 - 6030003
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    ||||| ||||| ||||| ||||||||||||||||| |||||| | |||||| |   |||||||||||||| |||||||||||   |||||||||||||||    
T  6030116 ctatttgaattttaaaagccaaaatatttcaacgtgtttttggaagttttatgaaatttttatgcagttcagattctaaaatttcaactgcatagggcac 6030017  T
Q  341 atgagaaactcata 354  Q
      ||||| ||||||    
T  6030016 gcgagaacctcata 6030003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 248 - 369
Target Start/End: Original strand, 7685469 - 7685589
Alignment:
Q  248 aattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaa 347  Q
    |||| |||||||  ||||||||||||||| ||||||| |||||| || |||||||||| ||||||||| |||||||  |||||||||| || | ||||||    
T  7685469 aattttaaaatctgaaatatttcaacgta-ttttgaaagttttatggagtttttatgcggttcggattataaaatctgaactgcatagagcgcgtgagaa 7685567  T
Q  348 actcatagggtggaaaaagaaa 369  Q
     ||||||||  | |||||||||    
T  7685568 gctcataggacgaaaaaagaaa 7685589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 34098415 - 34098495
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaat 322  Q
    ||||||| ||||||||||||||||||||| ||| |||||||| |||||||  || |||||||||||||||||||| ||||||    
T  34098415 ctattcgcattctaaaatccaaaatattttaacatatttttgtaggtttt-tggagtttttatgcagttcggattataaaat 34098495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 207 - 356
Target Start/End: Original strand, 37507535 - 37507684
Alignment:
Q  207 ttacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgca 306  Q
    ||||||||| || |||||||  |||| | || | |||||||||||||||||||| |||| ||||||||| |||| || | ||||| ||||| ||||||      
T  37507535 ttacttttcccaccctatgagtttcttgcgcgccctattcgaattctaaaatccgaaatgtttcaacgtgttttggaggtttttatggggtatttatgtc 37507634  T
Q  307 gttcggattctaaaatccaaactgcatagggcacatgagaaactcatagg 356  Q
    |||| ||||||| || ||||| ||||||||   || ||||||||||||||    
T  37507635 gttcagattctataaaccaaattgcataggaagcacgagaaactcatagg 37507684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 7632650 - 7632735
Alignment:
Q  205 cattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt 290  Q
    ||||| ||||||||||||||||  ||| | |||||  ||||| |||| ||||||   |||||||||||||||||||||||||||||    
T  7632650 cattatttttctcatcctatgagtttcacatgcaccttattcaaattttaaaatttgaaatatttcaacgtatttttgaaggtttt 7632735  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 262 - 371
Target Start/End: Complemental strand, 9045740 - 9045631
Alignment:
Q  262 aaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtgga 361  Q
    |||||||||||||| |||||| |||||||| || ||||||||||||| || ||| |||||| |||| || |||||   | ||| ||||| ||||| | ||    
T  9045740 aaatatttcaacgtgtttttggaggttttatggagtttttatgcagtccgaattttaaaattcaaattgtataggatgcgtgacaaacttataggataga 9045641  T
Q  362 aaaagaaaca 371  Q
    ||||||||||    
T  9045640 aaaagaaaca 9045631  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 264 - 340
Target Start/End: Original strand, 42183714 - 42183790
Alignment:
Q  264 atatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcac 340  Q
    |||||||||||| ||||||||  ||||| ||  |||||||| ||||||||||||||||| | ||||||||| |||||    
T  42183714 atatttcaacgtgtttttgaaaattttatggattttttatggagttcggattctaaaattcgaactgcatatggcac 42183790  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 354
Target Start/End: Original strand, 39039744 - 39039849
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    |||||||||||| ||| |||||||||| |||||  | |||||| |||  ||||||||| ||| |||| || |||||||||| |||||| |||  |||||     
T  39039744 attctaaaatccgaaacatttcaacgtgtttttagaagttttatgggaattttatgcaattcagattttagaatccaaactacataggtcacgagagaag 39039843  T
Q  349 ctcata 354  Q
    ||||||    
T  39039844 ctcata 39039849  T

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Target: chr4 (Bit Score: 53; Significance: 6e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 782453 - 782361
Alignment:
Q  242 tattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcata 334  Q
    |||||| |||||||||||| |||||||||||| | |||||| || ||||| | |||||||||||||||||||||||||||| | |||||||||    
T  782453 tattcggattctaaaatccgaaatatttcaacttttttttggagattttatgaggtttttatgcagttcggattctaaaattcgaactgcata 782361  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 7257369 - 7257292
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattcta 318  Q
    ||||||| |||||||||||||| |||||||||| | |||||| |||||||| | || |||||||||||||||||||||    
T  7257369 ctattcgtattctaaaatccaagatatttcaacatgtttttggaggttttatgaggattttatgcagttcggattcta 7257292  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 3664229 - 3664313
Alignment:
Q  248 aattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgca 332  Q
    ||||||||||||| |||||||| ||||| |||||| |||||||| | | ||||||||||||||  ||| || |||||||||||||    
T  3664229 aattctaaaatccgaaatattttaacgtgtttttgtaggttttatgagatttttatgcagttcctattttagaatccaaactgca 3664313  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 9603967 - 9603867
Alignment:
Q  203 gccattacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggttttacggggttttta 302  Q
    ||||||| ||||| || |||||||  |||||| ||   |||||| ||||||||||||  |||||||| |||||||||||| |||||||| ||||||||||    
T  9603967 gccattatttttcccaccctatgaccttctcgcgcgtcctattcaaattctaaaatctgaaatattttaacgtatttttggaggttttatggggttttta 9603868  T
Q  303 t 303  Q
    |    
T  9603867 t 9603867  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 27317146 - 27317071
Alignment:
Q  297 tttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactcatagggtggaaaaagaaacaa 372  Q
    |||||||  |||| ||||||||||||||||| |||||| ||| | ||||||||||||||| || ||||||||||||    
T  27317146 tttttatatagtttggattctaaaatccaaattgcataaggcgcgtgagaaactcataggatgtaaaaagaaacaa 27317071  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 239 - 368
Target Start/End: Original strand, 53689035 - 53689165
Alignment:
Q  239 ctctattcgaattctaaaatccaaaatatttcaacgtatttttgaaggtttt-acggggtttttatgcagttcggattctaaaatccaaactgcataggg 337  Q
    ||||||||| | |||||| |  ||||| ||||||||||||||||||  |||| | ||||| ||||||  |||| ||||||| |||||||| |  ||| ||    
T  53689035 ctctattcggaatctaaattttaaaatgtttcaacgtatttttgaaattttttatggggtgtttatgtcgttcagattctataatccaaattatataagg 53689134  T
Q  338 cacatgagaaactcatagggtggaaaaagaa 368  Q
    |||| || |||||||||||||| ||||||||    
T  53689135 cacaggaaaaactcatagggtgtaaaaagaa 53689165  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 371
Target Start/End: Complemental strand, 55301229 - 55301108
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaa 348  Q
    ||||||||||||||| ||||||||||| |||||  || ||||| | | ||||||||| ||||| ||| || ||||  ||| ||||||| ||  ||||||     
T  55301229 attctaaaatccaaa-tatttcaacgtgtttttagagattttatgagatttttatgccgttcgaattttagaatctgaaccgcataggacatgtgagaac 55301131  T
Q  349 ctcatagggtggaaaaagaaaca 371  Q
    || ||||||||||||||||||||    
T  55301130 ctaatagggtggaaaaagaaaca 55301108  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 30441368 - 30441445
Alignment:
Q  206 attacttttctcatcctatgaagttctcgtgcactctattcgaattctaaaatccaaaatatttcaacgtatttttga 283  Q
    |||||||||| || |||||||  ||||||||||| |||||   |||||||||||| ||| ||||||||||||||||||    
T  30441368 attacttttcccaccctatgagcttctcgtgcaccctatttagattctaaaatccgaaacatttcaacgtatttttga 30441445  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 10156883 - 10156848
Alignment:
Q  299 tttatgcagttcggattctaaaatccaaactgcata 334  Q
    ||||||||||||||||||||||||||||||||||||    
T  10156883 tttatgcagttcggattctaaaatccaaactgcata 10156848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 39791233 - 39791310
Alignment:
Q  241 ctattcgaattctaaaatccaaaatatttcaacgtatttttgaag-gttttacggggtttttatgcagttcggattcta 318  Q
    ||||| |||||||||||||| ||||||||||||||  ||||||||  ||||| ||||| ||||||| ||||||||||||    
T  39791233 ctatttgaattctaaaatccgaaatatttcaacgt-gttttgaagatttttatggggtgtttatgccgttcggattcta 39791310  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 249 - 364
Target Start/End: Complemental strand, 7257640 - 7257525
Alignment:
Q  249 attctaaaatccaaaatatttcaacgtatttttgaaggttttac-ggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaa 347  Q
    |||||||||||| |||| |||| |||| |||| || |||||||  |||| | |||||  ||| |||||||| ||||| |||| ||||| || ||||||||    
T  7257640 attctaaaatccgaaatgtttcgacgtgttttgga-ggttttattgggggtattatgtcgtttggattctataatccgaactacatagagcgcatgagaa 7257542  T
Q  348 actcatagggtggaaaa 364  Q
    ||||||| |||||||||    
T  7257541 actcataaggtggaaaa 7257525  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 253 - 368
Target Start/End: Complemental strand, 125 - 10
Alignment:
Q  253 taaaatccaaaatatttcaacgtatttttgaaggttttacggggtttttatgcagttcggattctaaaatccaaactgcatagggcacatgagaaactca 352  Q
    |||||||  |||||||| ||||| |||| || | ||||| ||||| ||||||| ||| |||||||| ||| | ||||||||| ||  |  ||||||||||    
T  125 taaaatctgaaatatttaaacgtgttttagaggtttttatggggtgtttatgccgtttggattctataattcgaactgcataaggagcgcgagaaactca 26  T
Q  353 tagggtggaaaaagaa 368  Q
    |||| |||||||||||    
T  25 taggttggaaaaagaa 10  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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