View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_10 (Length: 355)
Name: NF16217_low_10
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 13286589 - 13286287
Alignment:
| Q |
13 |
aaaatgaaagtgtcaagattcaaagtcttatgagatttttaattattaatacatttggcaaagaattatacagttatcatttctatgttat--gttatat |
110 |
Q |
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| T |
13286589 |
aaaatgaaagtgtcaagattaaaagtcttatgagatttt-----attaatacatttggaaaagaatgatacaattatcatttctctgttatatgttatat |
13286495 |
T |
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| Q |
111 |
tatgatatgcaacacaataataacatccagtgaagtgaaaatagtttcttgttgattaatgcaattcactccacttctcagagaatccacactttctgaa |
210 |
Q |
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| T |
13286494 |
tatgatatgcaacaaaataatcacatctagtgaagtgaaaatagtttcttgttgattaatgcaattcactccacttctcagagaatccacactttctgaa |
13286395 |
T |
|
| Q |
211 |
attggatgagtttgattatgatagaagttatcaattccatgtaaagttacatgagtttaattttgatatatatgtcagtgtaaaacttgtttacactacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| | |
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| T |
13286394 |
attggatgagtttgattatgatagaagttatcaatttcatgtaaagttacatcagtttaattttg----atatgtcggtgtaaaacttgtttacactatc |
13286299 |
T |
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| Q |
311 |
tagcaattacaa |
322 |
Q |
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|||| ||||||| |
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| T |
13286298 |
tagcgattacaa |
13286287 |
T |
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