View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16217_low_11 (Length: 345)
Name: NF16217_low_11
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_11 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 36019449 - 36019115
Alignment:
| Q |
1 |
acatctcttcgacttcaaaacaataactctcaggttctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatctatctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36019449 |
acatctcttcgacttcaaaacaataactctcaggttctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatctatctta |
36019350 |
T |
|
| Q |
101 |
atatcataacttcttgactagaagtatttctgcttctttaggtaacttacagtaactagagagatttctcttagtcataaccaatttagtggtcacattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36019349 |
atatcataacttcttgactagaagtatttctgcttctttaggtaacttacggtaactagagagatttctcttagtcataaccaatttagtggtcacattc |
36019250 |
T |
|
| Q |
201 |
ctcaaagtattggaaatatttcaaatcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36019249 |
ctcaaagtattggaaatatttcaaatcttaaacaacttgatctgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtct |
36019150 |
T |
|
| Q |
301 |
tagatgcttcaatgtttctcatagtaacctctctg |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
36019149 |
tagatgcttcaatgtttctcatagtaacctctctg |
36019115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 323
Target Start/End: Complemental strand, 36025433 - 36025136
Alignment:
| Q |
27 |
ctctcaggttctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatct-atcttaatatcataacttcttgactagaagt |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||| ||||||| ||||| |||||||||| || || | ||| |
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| T |
36025433 |
ctctcaggttctattcctaactcatggggtggtagcttgaaaaatggattctttaggcttcaaaatcttatcttgg-atcataactttttcaccggtagt |
36025335 |
T |
|
| Q |
126 |
atttctgcttctttaggtaacttacagtaact-agagagatttctcttagtcataaccaatttagtggtcacattcctcaaagtattggaaatatttcaa |
224 |
Q |
| |
|
||| ||| |||||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| |
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|
| T |
36025334 |
attcctgattctttaggtaacttaagggaacttagagagatttctctaagtcataaccaatttagtggtcacattcctcaaagtattgggaacctttcaa |
36025235 |
T |
|
| Q |
225 |
atcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctttgtctaccgacatagtcttagatgcttcaatgtttctcata |
323 |
Q |
| |
|
|||| ||| ||||||||||||| || |||||| |||||||||||| |||||||||||| | | | | |||||||| | ||||||||||||||||| |
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|
| T |
36025234 |
tgcttagacagcttgatttgtcactgaataatcttagtggagaaattccagtttcctttgacaatctgcctagtcttaatttcttcaatgtttctcata |
36025136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 36010745 - 36010593
Alignment:
| Q |
183 |
aatttagtggtcacattcctcaaagtattggaaatatttcaaatcttaaacaacttgatttgtcaccgagtaatctcagtggagaaattgcagtttcctt |
282 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||||| |
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|
| T |
36010745 |
aatttagtggtcacattccttaaagtattggaaatatttcaaatcttaaacaatttgatttgtcacggagtaatctcggtggataaattgcagtttcctt |
36010646 |
T |
|
| Q |
283 |
tgtctaccgacatagtcttagatgcttcaatgtttctcatagtaacctctctg |
335 |
Q |
| |
|
|| | ||| |||||||||||| ||||||||||||||||||| |||| |||||| |
|
|
| T |
36010645 |
tgacaacctacatagtcttagttgcttcaatgtttctcataataacgtctctg |
36010593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 36010865 - 36010749
Alignment:
| Q |
20 |
acaataactctcaggttctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatctatcttaatatcataacttcttgact |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| | |||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
36010865 |
acaataactctcaggttctattcctaactcatgggttcgtagcttcaaaaatgaattctttaggcttcaaaatctatcttaa-atcataacttcttgact |
36010767 |
T |
|
| Q |
120 |
agaagtatttctgcttct |
137 |
Q |
| |
|
| ||| ||| |||||||| |
|
|
| T |
36010766 |
ataagcattcctgcttct |
36010749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 36005748 - 36005631
Alignment:
| Q |
107 |
taacttcttgactagaagtatttctgcttctttaggtaacttacagtaact-agagagatttctcttagtcataaccaatttagtggtcacattcctcaa |
205 |
Q |
| |
|
||||||||| ||| |||| ||| ||| |||||| |||||||| | |||| || || |||||||| ||||||||||||||||||||| |||||| |||| |
|
|
| T |
36005748 |
taacttcttcactggaagcattcttgcatctttaagtaacttaagggaacttagggaaatttctct-agtcataaccaatttagtggttacattcgtcaa |
36005650 |
T |
|
| Q |
206 |
agtattggaaatatttcaa |
224 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
36005649 |
agtattggaaacatttcaa |
36005631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 19449743 - 19449801
Alignment:
| Q |
36 |
tctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatct |
94 |
Q |
| |
|
|||||||||||||| |||||||||| || ||| |||||||||||||||| ||||||| |
|
|
| T |
19449743 |
tctattcctaactcctggggtggtagattttaaaatggattctttaggcttcaaaatct |
19449801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 36013547 - 36013486
Alignment:
| Q |
33 |
ggttctattcctaactcacggggtggtagcttcaaaactggattctttaggcttaaaaatct |
94 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||||||||| || ||||||||| ||| ||||||| |
|
|
| T |
36013547 |
ggttatattcctaattcatggggtggtagcttcaaatatgtattctttagacttcaaaatct |
36013486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 271
Target Start/End: Complemental strand, 22792145 - 22792031
Alignment:
| Q |
159 |
gagagatttctcttagtcataaccaatttagtggtcacattcctcaaagta-ttggaaatatttcaaatcttaaacaacttgatttgtc-accgagtaat |
256 |
Q |
| |
|
||||||||| || ||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||| |||| |||||||| || | ||| |||| |
|
|
| T |
22792145 |
gagagatttttcatagtcatcaccaatttagtggtcacattcctcaaaaaatttggaaacatttcaaatcttcaacagcttgatttctcaaacgaataat |
22792046 |
T |
|
| Q |
257 |
ctcagtggagaaatt |
271 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
22792045 |
cttagtggagaaatt |
22792031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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