View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16217_low_12 (Length: 322)
Name: NF16217_low_12
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 21875844 - 21875899
Alignment:
| Q |
256 |
gcagaaatgggtcgtgctcgtgggaagttaactttgaaaccaattcaagatgagag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21875844 |
gcagaaatgggtcgtgctcgtgggaagttaactttgaaaccaattcaagatgagag |
21875899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 21867680 - 21867712
Alignment:
| Q |
11 |
cacagaatatcgcataactactctgaaaggtaa |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21867680 |
cacagaatatcgcataactactctgaaaggtaa |
21867712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 21819462 - 21819414
Alignment:
| Q |
258 |
agaaatgggtcgtgctcgtgggaagttaactttgaaaccaattcaagat |
306 |
Q |
| |
|
||||||||||||| | ||||| || ||||||||||||| |||||||||| |
|
|
| T |
21819462 |
agaaatgggtcgtccacgtggaaaattaactttgaaacaaattcaagat |
21819414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University