View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_13 (Length: 312)
Name: NF16217_low_13
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 9606049 - 9605768
Alignment:
| Q |
21 |
ctcgatcacaagacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataagagttaaaattttg |
120 |
Q |
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| T |
9606049 |
ctcgatcacaagacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaataacagttaaaattttg |
9605950 |
T |
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| Q |
121 |
ttatcaatttagcgaccaattttttaaattggccgctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatt |
220 |
Q |
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| T |
9605949 |
ttatcaatttagcgaccaattttttaaattggccgctagattggtggagaacaacgtatttccaacactagcatagcataattgcaatatgcatccaatt |
9605850 |
T |
|
| Q |
221 |
tagatggtggcgaattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgtatgctgatgatg |
302 |
Q |
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| T |
9605849 |
tagatggtggcgaattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgtatgctgctgatg |
9605768 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 6450311 - 6450369
Alignment:
| Q |
233 |
aattacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta |
291 |
Q |
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| T |
6450311 |
aattacctcttgataagatcagctggtaatgcttgatcagtgaaaacccaattcttgta |
6450369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 6456576 - 6456624
Alignment:
| Q |
236 |
tacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaat |
284 |
Q |
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| T |
6456576 |
tacctcttgataagatcagccggtaatgcttggtcggtgaaaacccaat |
6456624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 104
Target Start/End: Original strand, 6449971 - 6450050
Alignment:
| Q |
25 |
atcacaagacgaaggccatgtggagacgatggatcctcaacggctaatcctctatatcaagcaaacaatttcttatcaat |
104 |
Q |
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| T |
6449971 |
atcacaagtcgaaggccgtgaggggaagagggatcctcaacagctaatcctctgaatcaaacaaacaatatgttatcaat |
6450050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 42689273 - 42689216
Alignment:
| Q |
234 |
attacctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta |
291 |
Q |
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| T |
42689273 |
attacctcttgataagatcagctggaagggcttgatcagggaaaacccaattcttgta |
42689216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 36745623 - 36745571
Alignment:
| Q |
239 |
ctcttgataagatcagccggtaatgcttgatcagtgaaaacccaattcttgta |
291 |
Q |
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| T |
36745623 |
ctcttgataagatcagcaggtagtgcttggtcaggaaaaacccaatccttgta |
36745571 |
T |
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