View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_18 (Length: 277)
Name: NF16217_low_18
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 43369020 - 43368777
Alignment:
| Q |
23 |
ggaatgaagctgcttagaaagcgtgacataccggaggaaagatacactaatgcttttctcggatacggacctgaagactcacattttgttattgaactca |
122 |
Q |
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| T |
43369020 |
ggaatgaagctgcttagaaagcgtgacataccggaggaaagatatactaatgcttttctcggatacggacctgaagactcacattttgttattgaactca |
43368921 |
T |
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| Q |
123 |
catacagtaaggctcgttttcgatgcatatttcaataagcatttctacagaaataaggtcctatttgaataaacaattaagttatgtgcttatgtatgac |
222 |
Q |
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| T |
43368920 |
catacagtaaggctcgttttttatacatatttcaataagcatttctacagaaataaggtcctatttgaataaacaattaagttaagtgcttatgtatgac |
43368821 |
T |
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| Q |
223 |
ctatttcgatgaataaaaataaaatgaagtcaaacagttttcat |
266 |
Q |
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| T |
43368820 |
ctatttcgataaataaaaataaaatgaagtcaaacagttttcat |
43368777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 33501096 - 33500986
Alignment:
| Q |
20 |
cttggaatgaagctgcttagaaagcgtgacataccggaggaaagatacactaatgcttttctcggatacggacctgaagactcacattttgttattgaac |
119 |
Q |
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|||||||||||| |||| ||||| |||||||| | ||||| | ||| |||||||| ||||| |||||||| ||||| || |||| |||| ||||||| |
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| T |
33501096 |
cttggaatgaaggtgctcagaaaacgtgacatgacagaggagaaatatactaatgcctttcttggatacggccctgaggatgcacactttgcgattgaac |
33500997 |
T |
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| Q |
120 |
tcacatacagt |
130 |
Q |
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| T |
33500996 |
taacatacagt |
33500986 |
T |
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