View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_2 (Length: 781)
Name: NF16217_low_2
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 661; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 10 - 769
Target Start/End: Original strand, 10838391 - 10839156
Alignment:
| Q |
10 |
gagatgaaggaatctgaattatttatttaaagtttaaagtgacaagtgaaaagaccacttttgtttcccactctatcactacactttcctatttatttca |
109 |
Q |
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| T |
10838391 |
gagatgaatgaatctgaattatttatttaaagtttaaagtgacaagtgaaaagaccacttttgtttcccactctatcactacactttcctatttatttca |
10838490 |
T |
|
| Q |
110 |
tcctcatgcatgcttctcttattatttatggcttttctatttaaagcttcgtttataaacatatatatctcacctttcttcatttaatttgcaatattca |
209 |
Q |
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| T |
10838491 |
tcctcatgcatgcttctcttattatttatggcttttctatttaaagcttcgtttataaacatatatatctcacatttcttcatttaatttgcaatattca |
10838590 |
T |
|
| Q |
210 |
tttgatctcattcattatacttctcatcctctcttcagtaaatatgatcaataagttatgtagatcaaaacttatggacatccatttcgaaatagtgagg |
309 |
Q |
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| T |
10838591 |
tttgatctcattcattatacttctcatcctctcttcagtaaatatgatcaataagttatgtagatcaaaacttatggccatccatttcgaaatagtgagg |
10838690 |
T |
|
| Q |
310 |
tttgttctttcaaaacttatatatctatttatttaatttgattacgaaaatatttgaaaacaaagagagcaaacataatataacttgcccttcaacttgt |
409 |
Q |
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| T |
10838691 |
ttggttctttcaaaacttatatatctatttatttaatttgattacgaaaatatttgaaaacaaagagagcaaacataatataacttgcccttcaacttgt |
10838790 |
T |
|
| Q |
410 |
agcattttaaatattaacaaattaaatactgtaaaaaagaataacaaattaa-----ttgttattggtttgtctctctgtctgaactctgaaggtaataa |
504 |
Q |
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| T |
10838791 |
agcattttaaatattaacaaattaaatactgtaaaaaagaataacaaattaaagtccttgttattggtttgtctctctgtctgaactctgaaggtaataa |
10838890 |
T |
|
| Q |
505 |
gatactaagatcgtttacccttaccagttacttacaatgtttaagcatgact-aaaatcaagattttaatttacaatacaagcacttacttttagctcgt |
603 |
Q |
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| T |
10838891 |
gatactaagatcgtttacccttaccagttacttacaatgtttaagcatgactaaaaatcaagattttaatttacaatacaagcacttagttttagctcgt |
10838990 |
T |
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| Q |
604 |
agccatattgagcaaataaatattaatgaatgatgcacacttcatcatattgctaattaattttatttcagtaacatggacaacttgatnnnnnnnngaa |
703 |
Q |
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| T |
10838991 |
agccatattgaacaaataaatattaatgaatgatgcacacttcatcatattgctaattagttttatttcagtaacatggacaacttgataaaaaaaagaa |
10839090 |
T |
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| Q |
704 |
agtaaaagtaacatgcacaataatcannnnnnnagaggatgcacaaaaaatgcacattaatatttt |
769 |
Q |
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| T |
10839091 |
agtaaaagtagcatgcacaataatcatttttttagaggatgcacaaaaaatgcacattaatatttt |
10839156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 10870313 - 10870356
Alignment:
| Q |
303 |
agtgaggtttgttctttcaaaacttatatatctatttatttaat |
346 |
Q |
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| T |
10870313 |
agtgaggtttgttccttcaaaacttatatatctatttatttaat |
10870356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 10870219 - 10870256
Alignment:
| Q |
179 |
tcacctttcttcatttaatttgcaatattcatttgatc |
216 |
Q |
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| T |
10870219 |
tcacctttcttcatttaatttgaaatattaatttgatc |
10870256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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