View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_20 (Length: 256)
Name: NF16217_low_20
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 25739327 - 25739540
Alignment:
| Q |
24 |
acgttgcctttaactctatctgacaccgacatatataattacatcgtgtcctgagtagtgcttcataggctctatctattaatttatcatcatttgccat |
123 |
Q |
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| T |
25739327 |
acgttacctttaactctatccgacaccgacatatataattacatcgtgtcctgagtcgtgcttcataggctctatctattaatttatcatcatttaccat |
25739426 |
T |
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| Q |
124 |
tttattcatgtctgtattaattctttcattttttacaactatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgt |
223 |
Q |
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| T |
25739427 |
tttattcatgtctgtattaattctttcattttttacaactatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgt |
25739526 |
T |
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| Q |
224 |
ttgtgtgttaaagt |
237 |
Q |
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|||||||||||||| |
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| T |
25739527 |
ttgtgtgttaaagt |
25739540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 25743099 - 25743150
Alignment:
| Q |
190 |
tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcat |
241 |
Q |
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| T |
25743099 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcat |
25743150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 25742955 - 25743001
Alignment:
| Q |
81 |
gtgcttcataggctctatctattaatttatcatcatttgccatttta |
127 |
Q |
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| T |
25742955 |
gtgcttcatagactctatctattaatttatcatcatttgcaatttta |
25743001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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