View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_21 (Length: 248)
Name: NF16217_low_21
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 36019668 - 36019449
Alignment:
| Q |
18 |
aaatgaatattacacgttagtatatatagactcaaaagctcacaaaattgttctacgtgggacttcttaatttttaaatatacaaaaggcactnnnnnnn |
117 |
Q |
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| T |
36019668 |
aaatgaatattacacgttagtatatatagactcaaaagctcacaaaattgttctacgtgggacttcttaatttttaaatatacaaaaggcactaaaaaaa |
36019569 |
T |
|
| Q |
118 |
ntacaacacaatactgaagagccttgtaaactccactaagttgtattggcttaagttgagcttcaattcattctccagtccaataccaactagcaactaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36019568 |
atacaacacaatactgaagagccttgtaaactccactaagttgtattggcttaagttgagcttcaattcattctcccgtccaataccaactagcaactaa |
36019469 |
T |
|
| Q |
218 |
cttgaattctctaactttca |
237 |
Q |
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|||||||||||||||||||| |
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| T |
36019468 |
cttgaattctctaactttca |
36019449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 26 - 237
Target Start/End: Complemental strand, 36011095 - 36010884
Alignment:
| Q |
26 |
attacacgttagtatatatagactcaaaagctcacaaaattgttctacgtgggacttcttaatttttaaatatacaaaaggcactnnnnnnnntacaaca |
125 |
Q |
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||||||| ||||||||| |||||||||| |||||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
36011095 |
attacacactagtatataaagactcaaaatctcacaaaattgttttatgtgggacttctagttttttaaatatacaaaaagcactacaaaaaatacaaca |
36010996 |
T |
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| Q |
126 |
caatactgaagagccttgtaaactccactaagttgtattggcttaagttgagcttcaattcattctccagtccaataccaactagcaactaacttgaatt |
225 |
Q |
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|||| || ||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||| | |||||||||||||||||||||||||||||| |
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| T |
36010995 |
caatccttgagagccttgtaaattccaccaagttgtaccggcttaacttgagcttcaataaattctctattccaataccaactagcaactaacttgaatt |
36010896 |
T |
|
| Q |
226 |
ctctaactttca |
237 |
Q |
| |
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|||| ||||||| |
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| T |
36010895 |
ctctcactttca |
36010884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 35195052 - 35195102
Alignment:
| Q |
34 |
ttagtatatatagactcaaaagctcacaaaattgttctacgtgggacttct |
84 |
Q |
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|||||||||| ||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
35195052 |
ttagtatataaagactcaaatgctcataaaattgttctgtgtgggacttct |
35195102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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