View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16217_low_23 (Length: 232)

Name: NF16217_low_23
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16217_low_23
NF16217_low_23
[»] chr4 (21 HSPs)
chr4 (18-223)||(44024784-44024989)
chr4 (88-223)||(14628976-14629112)
chr4 (88-223)||(12621984-12622118)
chr4 (89-223)||(16027391-16027524)
chr4 (88-194)||(19567252-19567357)
chr4 (109-210)||(46225730-46225830)
chr4 (15-98)||(14629257-14629340)
chr4 (15-95)||(9923449-9923529)
chr4 (15-98)||(35659979-35660062)
chr4 (15-89)||(11479330-11479404)
chr4 (88-176)||(12622132-12622218)
chr4 (16-98)||(19435394-19435474)
chr4 (88-176)||(35659421-35659507)
chr4 (168-223)||(55582007-55582062)
chr4 (88-174)||(26444552-26444636)
chr4 (16-81)||(37018960-37019025)
chr4 (92-141)||(46739870-46739919)
chr4 (170-210)||(35659256-35659296)
chr4 (15-90)||(25512763-25512838)
chr4 (172-210)||(46739766-46739804)
chr4 (106-145)||(17958191-17958231)
[»] chr3 (35 HSPs)
chr3 (88-223)||(16180663-16180798)
chr3 (88-223)||(11191142-11191277)
chr3 (114-223)||(11561716-11561825)
chr3 (88-208)||(12860496-12860615)
chr3 (121-210)||(17668904-17668992)
chr3 (109-210)||(12564004-12564100)
chr3 (15-98)||(16180435-16180518)
chr3 (16-98)||(11562001-11562083)
chr3 (15-98)||(11191422-11191505)
chr3 (15-98)||(33564379-33564462)
chr3 (15-93)||(6145708-6145786)
chr3 (106-223)||(15026302-15026419)
chr3 (130-223)||(50756607-50756698)
chr3 (16-98)||(50348722-50348803)
chr3 (16-81)||(14153095-14153160)
chr3 (130-176)||(1209239-1209284)
chr3 (88-177)||(24545315-24545402)
chr3 (88-177)||(24557030-24557117)
chr3 (90-174)||(17206799-17206881)
chr3 (18-90)||(24556169-24556241)
chr3 (168-223)||(50756711-50756766)
chr3 (18-92)||(15565788-15565862)
chr3 (130-176)||(45804654-45804699)
chr3 (88-177)||(24549345-24549432)
chr3 (88-141)||(24553971-24554024)
chr3 (168-223)||(12539995-12540050)
chr3 (93-176)||(17206706-17206787)
chr3 (15-54)||(22842406-22842445)
chr3 (15-54)||(24556216-24556255)
chr3 (15-54)||(45804196-45804235)
chr3 (108-145)||(25200870-25200907)
chr3 (106-146)||(3161747-3161787)
chr3 (18-54)||(24553106-24553142)
chr3 (18-54)||(24553454-24553490)
chr3 (18-54)||(24556504-24556540)
[»] chr1 (17 HSPs)
chr1 (88-223)||(44891144-44891279)
chr1 (91-223)||(24721142-24721273)
chr1 (88-208)||(45473785-45473904)
chr1 (15-98)||(14793726-14793809)
chr1 (16-81)||(1642795-1642860)
chr1 (130-223)||(39052138-39052229)
chr1 (93-223)||(6832903-6833033)
chr1 (130-176)||(22826073-22826118)
chr1 (88-174)||(44891286-44891370)
chr1 (40-93)||(14793926-14793979)
chr1 (170-223)||(39052070-39052123)
chr1 (106-146)||(21190536-21190576)
chr1 (106-145)||(12709500-12709539)
chr1 (15-54)||(14793838-14793877)
chr1 (90-141)||(17904377-17904428)
chr1 (187-223)||(12709359-12709395)
chr1 (187-223)||(12713000-12713036)
[»] chr8 (21 HSPs)
chr8 (88-223)||(12800192-12800327)
chr8 (88-223)||(6574362-6574496)
chr8 (88-222)||(36729140-36729274)
chr8 (88-207)||(36733890-36734008)
chr8 (88-210)||(2718086-2718207)
chr8 (88-210)||(22473041-22473162)
chr8 (15-216)||(31724256-31724465)
chr8 (15-98)||(22258985-22259068)
chr8 (15-94)||(23669761-23669840)
chr8 (15-98)||(12800506-12800589)
chr8 (141-223)||(36406687-36406768)
chr8 (88-176)||(22473176-22473262)
chr8 (106-224)||(22343748-22343866)
chr8 (106-224)||(22355408-22355526)
chr8 (88-149)||(36406316-36406377)
chr8 (166-223)||(22482553-22482610)
chr8 (172-223)||(20518430-20518481)
chr8 (15-98)||(36728918-36729001)
chr8 (168-221)||(5079691-5079744)
chr8 (185-222)||(22480416-22480453)
chr8 (109-176)||(22473276-22473341)
[»] chr7 (22 HSPs)
chr7 (88-223)||(13134274-13134409)
chr7 (88-223)||(15577277-15577411)
chr7 (88-223)||(20253964-20254096)
chr7 (15-98)||(13134045-13134128)
chr7 (15-98)||(14161555-14161638)
chr7 (16-98)||(18875542-18875622)
chr7 (16-98)||(3287271-3287353)
chr7 (16-98)||(43277440-43277522)
chr7 (15-81)||(8514427-8514493)
chr7 (166-223)||(9255785-9255842)
chr7 (166-223)||(9314408-9314465)
chr7 (106-145)||(11314300-11314339)
chr7 (168-223)||(11314493-11314548)
chr7 (130-176)||(15105378-15105423)
chr7 (130-176)||(24271104-24271149)
chr7 (92-141)||(9744470-9744519)
chr7 (106-145)||(33059358-33059397)
chr7 (172-222)||(9255718-9255768)
chr7 (172-222)||(9314482-9314532)
chr7 (92-174)||(9744379-9744459)
chr7 (172-210)||(9744595-9744633)
chr7 (162-210)||(48217952-48218001)
[»] scaffold0005 (2 HSPs)
scaffold0005 (88-223)||(188271-188407)
scaffold0005 (15-98)||(188043-188126)
[»] chr2 (19 HSPs)
chr2 (87-208)||(10744577-10744698)
chr2 (118-223)||(25138586-25138691)
chr2 (15-98)||(25140220-25140303)
chr2 (15-98)||(10744377-10744460)
chr2 (15-94)||(22689972-22690051)
chr2 (15-94)||(22694568-22694647)
chr2 (15-94)||(20915396-20915475)
chr2 (15-98)||(28345772-28345855)
chr2 (90-141)||(1385137-1385188)
chr2 (106-145)||(14184902-14184941)
chr2 (168-223)||(22685443-22685498)
chr2 (15-98)||(28345956-28346039)
chr2 (168-223)||(36733161-36733216)
chr2 (168-223)||(45679152-45679207)
chr2 (88-123)||(25140040-25140075)
chr2 (15-54)||(25587513-25587552)
chr2 (168-223)||(44761825-44761880)
chr2 (88-141)||(21317031-21317084)
chr2 (88-141)||(21337021-21337074)
[»] scaffold0213 (1 HSPs)
scaffold0213 (88-223)||(17772-17906)
[»] scaffold0113 (2 HSPs)
scaffold0113 (88-223)||(33461-33596)
scaffold0113 (15-54)||(33775-33814)
[»] chr5 (12 HSPs)
chr5 (88-223)||(14027166-14027297)
chr5 (88-223)||(12354770-12354904)
chr5 (88-223)||(8834471-8834605)
chr5 (88-206)||(8505023-8505140)
chr5 (15-81)||(23200188-23200254)
chr5 (130-176)||(16605599-16605644)
chr5 (130-176)||(22110524-22110569)
chr5 (90-141)||(6551807-6551858)
chr5 (90-141)||(6551933-6551984)
chr5 (88-140)||(26646370-26646422)
chr5 (106-145)||(21402092-21402131)
chr5 (185-223)||(21402234-21402272)
[»] scaffold0017 (1 HSPs)
scaffold0017 (88-223)||(25190-25324)
[»] scaffold0645 (2 HSPs)
scaffold0645 (114-223)||(870-979)
scaffold0645 (16-98)||(612-694)
[»] scaffold0439 (1 HSPs)
scaffold0439 (91-223)||(3053-3184)
[»] scaffold0121 (1 HSPs)
scaffold0121 (109-223)||(18893-19006)
[»] scaffold0505 (1 HSPs)
scaffold0505 (109-223)||(3471-3584)
[»] scaffold1186 (1 HSPs)
scaffold1186 (15-98)||(106-189)
[»] scaffold0054 (2 HSPs)
scaffold0054 (15-98)||(66396-66479)
scaffold0054 (86-140)||(66623-66677)
[»] scaffold0011 (4 HSPs)
scaffold0011 (15-98)||(40237-40320)
scaffold0011 (92-176)||(39565-39647)
scaffold0011 (88-141)||(39498-39551)
scaffold0011 (172-208)||(39387-39423)
[»] scaffold0162 (1 HSPs)
scaffold0162 (15-94)||(24751-24830)
[»] chr6 (16 HSPs)
chr6 (15-94)||(20411416-20411495)
chr6 (113-223)||(18400883-18400992)
chr6 (15-98)||(18927973-18928056)
chr6 (130-176)||(19234114-19234159)
chr6 (88-141)||(23492835-23492888)
chr6 (88-141)||(23498433-23498486)
chr6 (88-176)||(19958225-19958311)
chr6 (15-90)||(13284823-13284898)
chr6 (15-54)||(18458407-18458446)
chr6 (168-223)||(29043983-29044038)
chr6 (130-176)||(25917426-25917471)
chr6 (88-141)||(22555874-22555927)
chr6 (89-141)||(23492733-23492785)
chr6 (89-141)||(23498331-23498383)
chr6 (137-176)||(30674644-30674682)
chr6 (168-222)||(31347081-31347135)
[»] scaffold1223 (1 HSPs)
scaffold1223 (15-98)||(626-709)
[»] scaffold0335 (1 HSPs)
scaffold0335 (16-98)||(954-1036)
[»] scaffold1256 (4 HSPs)
scaffold1256 (88-176)||(599-685)
scaffold1256 (88-140)||(699-751)
scaffold1256 (168-210)||(823-865)
scaffold1256 (15-92)||(13-90)
[»] scaffold0045 (1 HSPs)
scaffold0045 (15-94)||(46701-46779)
[»] scaffold0125 (2 HSPs)
scaffold0125 (162-223)||(24309-24370)
scaffold0125 (106-145)||(24449-24488)
[»] scaffold0074 (1 HSPs)
scaffold0074 (16-81)||(882-947)
[»] scaffold0063 (1 HSPs)
scaffold0063 (88-141)||(61446-61499)
[»] scaffold0401 (2 HSPs)
scaffold0401 (15-54)||(7609-7648)
scaffold0401 (40-93)||(7507-7560)
[»] scaffold0178 (2 HSPs)
scaffold0178 (15-54)||(461-500)
scaffold0178 (40-93)||(549-602)
[»] scaffold0174 (1 HSPs)
scaffold0174 (168-223)||(14759-14814)
[»] scaffold0048 (1 HSPs)
scaffold0048 (15-54)||(55725-55764)
[»] scaffold0453 (2 HSPs)
scaffold0453 (94-176)||(6012-6092)
scaffold0453 (172-210)||(6134-6172)
[»] scaffold0059 (1 HSPs)
scaffold0059 (130-176)||(48844-48889)
[»] scaffold0628 (2 HSPs)
scaffold0628 (39-92)||(4282-4335)
scaffold0628 (39-92)||(8842-8895)
[»] scaffold0231 (2 HSPs)
scaffold0231 (88-141)||(19148-19201)
scaffold0231 (168-223)||(19263-19318)
[»] scaffold0004 (2 HSPs)
scaffold0004 (170-223)||(64790-64843)
scaffold0004 (168-221)||(67518-67571)
[»] scaffold0058 (1 HSPs)
scaffold0058 (106-146)||(60802-60842)
[»] scaffold0802 (1 HSPs)
scaffold0802 (15-54)||(5386-5425)
[»] scaffold0056 (1 HSPs)
scaffold0056 (168-223)||(15115-15170)
[»] scaffold0303 (1 HSPs)
scaffold0303 (121-151)||(14363-14393)
[»] scaffold0285 (1 HSPs)
scaffold0285 (134-176)||(18517-18558)
[»] scaffold0100 (2 HSPs)
scaffold0100 (130-176)||(10455-10500)
scaffold0100 (130-176)||(27918-27963)
[»] scaffold0394 (1 HSPs)
scaffold0394 (108-145)||(8484-8521)
[»] scaffold0112 (1 HSPs)
scaffold0112 (139-176)||(1549-1585)
[»] scaffold0108 (1 HSPs)
scaffold0108 (88-141)||(8239-8292)
[»] scaffold0379 (2 HSPs)
scaffold0379 (168-223)||(9258-9314)
scaffold0379 (168-223)||(16450-16506)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-54)||(62674-62710)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 44024784 - 44024989
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgatgatttggagttaattgatg 117  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44024784 gaatatgatgttatatgaagttgaattcttatatgaatgtacttgttaataattataatgttatatgatgttgttaatgatgatttgaagttaattgatg 44024883  T
Q  118 atgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctg 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||     
T  44024884 atgtatagttggaattatgtgaagcattaacactgtttaattgattgttgtttatgttgataagttctcttacttaaattaatgtttatcagtattgcta 44024983  T
Q  218 atgatg 223  Q
    ||||||    
T  44024984 atgatg 44024989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 14629112 - 14628976
Alignment:
Q  88 ttgttaatgatgatttggag-ttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtc 186  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  14629112 ttgttaatgatgatttgaagattaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagctctc 14629013  T
Q  187 ttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  14629012 ttacttaaattactgtttattagtattgctaatgatg 14628976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 12622118 - 12621984
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |||    
T  12622118 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtaaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 12622020  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||| || || ||||||    
T  12622019 tacttaaattattgtttattagttttactaatgatg 12621984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 16027391 - 16027524
Alignment:
Q  89 tgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtctt 188  Q
    |||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||    
T  16027391 tgttaatgatgatttgaagttagctgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctctt 16027489  T
Q  189 acttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||||||||| || || ||||||    
T  16027490 acttaaattattgtttattagttttactaatgatg 16027524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 19567252 - 19567357
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  19567252 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 19567350  T
Q  188 tacttaa 194  Q
    |||||||    
T  19567351 tacttaa 19567357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 46225730 - 46225830
Alignment:
Q  109 taattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttatta 208  Q
    ||||| ||||| |||| |||||||||||||||| || || |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  46225730 taattaatgatttatatttggaattatgtgaagtatcaatattgtttaattg-ttgttgtttatgttgataaattctcttacttaaattattgtttatta 46225828  T
Q  209 gt 210  Q
    ||    
T  46225829 gt 46225830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 14629340 - 14629257
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  14629340 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 14629257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 9923529 - 9923449
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaat 95  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||| ||||||||||||||| |||||    
T  9923529 gatgaatatgatgctatatgaagttgaattcttatatgaatgtacatgttgataactatgatgttatatgatgttattaat 9923449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 35660062 - 35659979
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| |||| |||| ||  ||||||||||||||| ||||||||    
T  35660062 gatgaatatgatgttatatgaaattgaattcttatatgaatgtacatgttgataactacgatgttatatgatgttattaatgat 35659979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 11479330 - 11479404
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgtt 89  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||| |||||||||||||||    
T  11479330 gatgaatatgatgctatatgaagttgaattcttatatgaatgtacatgttgataactatgatgttatatgatgtt 11479404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 12622218 - 12622132
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || || ||| ||| |||| |||||||||||||||    
T  12622218 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagtatcaatattattt-attg-ttgttgtttatgttg 12622132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 19435394 - 19435474
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||  || ||||||||||||||| ||||||||    
T  19435394 atgaatatgatgatatatgaagttgatttcttatatgaatgtacctgttgataa--atgatgttatatgatgttattaatgat 19435474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 35659507 - 35659421
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||| |||| | ||||||| ||||||||||| ||||||||| || || ||| ||| |||| |||||||||||||||    
T  35659507 ttgttaatgatgatttgaagttgaatgatgatttatagttggaagtatgtgaaggatcaatattattt-attg-ttgttgtttatgttg 35659421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 55582062 - 55582007
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  55582062 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 55582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 26444636 - 26444552
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgt 174  Q
    ||||||||||||||||| |||| ||||||||| |||| |||||| ||||||||| || || ||| ||| |||| |||||||||||||    
T  26444636 ttgttaatgatgatttgaagttgattgatgatttataattggaactatgtgaaggatcaatattattt-attg-ttgttgtttatgt 26444552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 37019025 - 37018960
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    |||||||||||| || |||||||||| |||||||||||| ||| ||||| |||| ||| |||||||    
T  37019025 atgaatatgatgatagatgaagttgatttcttatatgaatgtatctgttgataactatgatgttat 37018960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 46739919 - 46739870
Alignment:
Q  92 taatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  46739919 taatgatgatttgaagttgattgatgatttatagttggaactatgtgaag 46739870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 35659296 - 35659256
Alignment:
Q  170 tatgttgataagttgtcttacttaaattattgtttattagt 210  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  35659296 tatgttgataaattctcttacttaaattattgtttattagt 35659256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 25512838 - 25512763
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttg 90  Q
    ||||||| ||||||||||||| |||||||| ||||| ||| |||  |||| || | ||| ||||||||||||||||    
T  25512838 gatgaatgtgatgttatatgatgttgaattattataggaatgtatatgttgatgaatatgatgttatatgatgttg 25512763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 46739804 - 46739766
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagt 210  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  46739804 tgttgataaattctcttacttaaattattgtttattagt 46739766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 17958231 - 17958191
Alignment:
Q  106 agttaattgatgatgtatagttggaa-ttatgtgaagcatt 145  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  17958231 agttaattgatgatttatagttggaatttatgtgaagcatt 17958191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 16180663 - 16180798
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16180663 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctct 16180762  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  16180763 tacttaaattactgtttattagtattgctaatgatg 16180798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 11191277 - 11191142
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||    
T  11191277 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcactaacattgtttaattgatttttgtttatgtcgataagttctct 11191178  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| |||||||||||||| || ||||||    
T  11191177 tacttaaattactgtttattagtattactaatgatg 11191142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 11561825 - 11561716
Alignment:
Q  114 gatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtatt 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||    
T  11561825 gatgatgtatagttggaattatgtgaaacattaacattgtttaattgattgttgtttatgttgataagttctcttacttaaattactatttatttgtatt 11561726  T
Q  214 gctgatgatg 223  Q
    ||| ||||||    
T  11561725 gctaatgatg 11561716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 208
Target Start/End: Original strand, 12860496 - 12860615
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||| ||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||    
T  12860496 ttgttgatgatgatttgaagttgattgatgatttatagttgaaattatgtgaagcattaacattgttaaattg-ttgttgtttatgttgataaattctct 12860594  T
Q  188 tacttaaattattgtttatta 208  Q
    |||||||||||||||||||||    
T  12860595 tacttaaattattgtttatta 12860615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 17668992 - 17668904
Alignment:
Q  121 tatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagt 210  Q
    |||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| || ||||||||||| ||||||||||||||    
T  17668992 tatagttggaattatgtgaaacattaacattgtttaattg-ttattgtttatgttgataaattctcttacttaaactattgtttattagt 17668904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 210
Target Start/End: Complemental strand, 12564100 - 12564004
Alignment:
Q  109 taattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttatta 208  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |    |||||||||||||||||||    
T  12564100 taattaatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattct----cttaaattattgtttatta 12564006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 16180435 - 16180518
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||| ||||||| ||||||||    
T  16180435 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgttatgtgatgttattaatgat 16180518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 11562083 - 11562001
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  11562083 atgaatatgatgttatatgaagttgaattattatatgaatgtacctgttaataactatgatgttatgtgatgttattaatgat 11562001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 11191505 - 11191422
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  11191505 gatgaatatgatgttatatgaaattgagttcttatatgaatgtacctgttaataactatgatgttatgtgatgttattaatgat 11191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 33564462 - 33564379
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| |||| |||| ||| ||||||||||||||| ||||||||    
T  33564462 gatgaatatgatgctatatgaagttgaattcttatatgaatgtacatgttgataactatgatgttatatgatgttattaatgat 33564379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 6145786 - 6145708
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtta 93  Q
    ||||||||| |||||||||||||||||||| ||||||||| ||| || || |||| ||| |||||||||||||||||||    
T  6145786 gatgaatataatgttatatgaagttgaattattatatgaatgtatctattgataactatgatgttatatgatgttgtta 6145708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 15026302 - 15026419
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgttta-tgttgataagttgtcttacttaaattattgttt 204  Q
    |||||||||||||| |||||||||||||||||||||||||     || | | ||| | |||||||  ||||||||| || ||||||||||||||||||||    
T  15026302 agttaattgatgatttatagttggaattatgtgaagcattgttgatgatgatttg-tcgttgttttgtgttgataaattctcttacttaaattattgttt 15026400  T
Q  205 attagtattgctgatgatg 223  Q
    |||||||||||| ||||||    
T  15026401 attagtattgctaatgatg 15026419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 50756607 - 50756698
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| | | ||||||||||| ||||| ||||||||    
T  50756607 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgttaaattctc-tacttgactcattgtttattactattgttgatgatg 50756698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 50348722 - 50348803
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||||||| | || ||| ||||||||||||||| ||||||||    
T  50348722 atgaatatgatgatatatgaagttgatttcttatttgaatgtacctgttga-aactatgatgttatatgatgttattaatgat 50348803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 14153095 - 14153160
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| |||| ||| |||||||    
T  14153095 atgaatatgatgatatatgaagttgatttcttatatgaatgtacctgttgataactatgatgttat 14153160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 1209239 - 1209284
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1209239 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttg 1209284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Complemental strand, 24545402 - 24545315
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttga 177  Q
    ||||||||||||||||| |||| ||| ||||| ||||||||||| ||||||||| || || ||| ||| |||| ||||||||||||||||    
T  24545402 ttgttaatgatgatttgaagttgatttatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgttga 24545315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 24557030 - 24557117
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttga 177  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||| ||||||||| || || ||| ||| |||| ||||||||||||||||    
T  24557030 ttgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgttga 24557117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 17206881 - 17206799
Alignment:
Q  90 gttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgt 174  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| || || |||  ||||||| |||||||||||||    
T  17206881 gttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatatt-attaattg-ttgttgtttatgt 17206799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 24556169 - 24556241
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttg 90  Q
    |||||||||||||||||| |||||||| ||||||||| |||  |||| || | ||| ||||||||||||||||    
T  24556169 gaatatgatgttatatgatgttgaattattatatgaatgtatatgttgatgaatatgatgttatatgatgttg 24556241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 50756711 - 50756766
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||| ||||||||    
T  50756711 tttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 50756766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 15565862 - 15565788
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtt 92  Q
    |||||||||||||||||| |||||||| ||||||||| |||  ||||  ||| ||| |||||| |||||||||||    
T  15565862 gaatatgatgttatatgatgttgaattattatatgaaggtatatgttggtaaatatgatgttacatgatgttgtt 15565788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 45804654 - 45804699
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  45804654 aattatgtgtagcattaacattgtttaattg-ttgttgtttatgttg 45804699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 24549345 - 24549432
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttga 177  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||| ||||||||  || || ||| ||| |||| ||||||||||||||||    
T  24549345 ttgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaattatcaatattattt-attg-ttgttgtttatgttga 24549432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 24553971 - 24554024
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||| |||||||||    
T  24553971 ttgttaatgacgatttgaagttgattgatgatttatagttggaactatgtgaag 24554024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 12540050 - 12539995
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||  || |||||  ||||||||||||||||||||||||| ||||||    
T  12540050 tttatgttgatatattctcttatctaaattattgtttattagtattgctaatgatg 12539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 17206787 - 17206706
Alignment:
Q  93 aatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||||||||| |||| ||||||||| ||||||||||  ||||||||| || || ||| ||| |||| |||||||||||||||    
T  17206787 aatgatgatttgaagttgattgatgatttatagttggagctatgtgaagtatcaatattattt-attg-ttgttgtttatgttg 17206706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 22842406 - 22842445
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  22842406 gatgaatatgatgttatatgatgttgaattattatatgaa 22842445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 24556216 - 24556255
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  24556216 gatgaatatgatgttatatgatgttgaattattatatgaa 24556255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 45804196 - 45804235
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  45804196 gatgaatatgatgttatatgatgttgaattattatatgaa 45804235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 25200907 - 25200870
Alignment:
Q  108 ttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||| | |||||||||||||||||||||||    
T  25200907 ttaattgatgatttgtagttggaattatgtgaagcatt 25200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 3161747 - 3161787
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatta 146  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  3161747 agttaattgatgatttgtagttggaattatgagaagcatta 3161787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 24553106 - 24553142
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||| |||||||| |||||||||    
T  24553106 gaatatgatgttatatgatgttgaattattatatgaa 24553142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 24553454 - 24553490
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||| |||||||| |||||||||    
T  24553454 gaatatgatgttatatgatgttgaattattatatgaa 24553490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 24556504 - 24556540
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||| |||||||| |||||||||    
T  24556504 gaatatgatgttatatgatgttgaattattatatgaa 24556540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 44891279 - 44891144
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  44891279 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataaattctct 44891180  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  44891179 tacttaaattactgtttattagtattgctaatgatg 44891144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 24721142 - 24721273
Alignment:
Q  91 ttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttac 190  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||    
T  24721142 ttaatgatgatttgaagttaattgatgatttatagttagaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctcttac 24721240  T
Q  191 ttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||||||| || || ||||||    
T  24721241 ttaaattattgtttattagttttactaatgatg 24721273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 45473904 - 45473785
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    |||||||||||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |    
T  45473904 ttgttaatgatgattcaaagttaattgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattcttt 45473806  T
Q  188 tacttaaattattgtttatta 208  Q
    |||||||||||||||||||||    
T  45473805 tacttaaattattgtttatta 45473785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 14793726 - 14793809
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||| ||||||||| |||  |||| || | ||| |||||||||||||||||| |||||    
T  14793726 gatgaatatgatgttatatgaagttgaattattatatgaatgtatatgttgatgaatatgatgttatatgatgttgttcatgat 14793809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 1642860 - 1642795
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| |||||||    
T  1642860 atgaatatgatgttatatgaagttgaattcttatatgaatgtacttgttgataactatgatgttat 1642795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 39052229 - 39052138
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || || ||||| | | ||||||||||| ||||| ||||||||    
T  39052229 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgttaaattctc-tacttgactcattgtttattactattgttgatgatg 39052138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 6833033 - 6832903
Alignment:
Q  93 aatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttg-tttatgttgataagttgtcttact 191  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||| ||||     || | | |||  ||||| ||||||||||||| |  |||||      
T  6833033 aatgatgatttgaagttaattgatgatttatagttggaattatgtgaaccattgttgatgatgatttg-ctgttgttttatgttgataaatcctcttatc 6832935  T
Q  192 taaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||||| ||||||    
T  6832934 taaattattgtttattagtattgctaatgatg 6832903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 22826073 - 22826118
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22826073 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttg 22826118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 44891370 - 44891286
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgt 174  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| || || ||| ||| |||| |||||||||||||    
T  44891370 ttgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgt 44891286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 14793926 - 14793979
Alignment:
Q  40 gaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtta 93  Q
    ||||||||||||||| ||| ||||| |||| ||| |||||||||||||||||||    
T  14793926 gaattcttatatgaatgtatctgttgataactatgatgttatatgatgttgtta 14793979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 39052123 - 39052070
Alignment:
Q  170 tatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| || |||||  ||||||||||||||||||||||| ||||||||    
T  39052123 tatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 39052070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 21190536 - 21190576
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatta 146  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  21190536 agttaattgatgatttgtagttggaattatgtgaagcatta 21190576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 12709539 - 12709500
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  12709539 agttaattgatgatttataattggaattatgtgaagcatt 12709500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 14793838 - 14793877
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  14793838 gatgaatatgatgttatatgaagttgaaatattatatgaa 14793877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 17904377 - 17904428
Alignment:
Q  90 gttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||| |||  ||||||||| ||||||||||| |||||||||    
T  17904377 gttaatgatgatttgaagtcgattgatgatttatagttggaactatgtgaag 17904428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 12709395 - 12709359
Alignment:
Q  187 ttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12709395 ttacttaaattattgtttattagtattgttaatgatg 12709359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 12713036 - 12713000
Alignment:
Q  187 ttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||||||||||||||| | ||||||    
T  12713036 ttacttaaattattgtttattagtattgttaatgatg 12713000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 12800327 - 12800192
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12800327 ttgttaatgatgatttgaagttaattgatgatgtacagttcgaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctct 12800228  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| ||||||||||||||||| ||||||    
T  12800227 tacttaaattactgtttattagtattgctaatgatg 12800192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 6574362 - 6574496
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  6574362 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 6574460  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||| || || ||||||    
T  6574461 tacttaaattattgtttattagttttactaatgatg 6574496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 36729140 - 36729274
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |||    
T  36729140 ttgttaatgatgatttgaagttaattgatgatgtatagtttgaattaagtggagcgttaacattgtttaattgattgttgtttatgttgataagttctct 36729239  T
Q  188 tacttaaattattgtttattagtattgctgatgat 222  Q
    ||||||||||| ||||||||||||||||| |||||    
T  36729240 tacttaaattactgtttattagtattgctaatgat 36729274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 207
Target Start/End: Original strand, 36733890 - 36734008
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  36733890 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 36733988  T
Q  188 tacttaaattattgtttatt 207  Q
    ||||||||||||||||||||    
T  36733989 tacttaaattattgtttatt 36734008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 2718086 - 2718207
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  2718086 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 2718184  T
Q  188 tacttaaattattgtttattagt 210  Q
    |||||||||| ||||||||||||    
T  2718185 tacttaaattgttgtttattagt 2718207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 22473162 - 22473041
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| | || |||    
T  22473162 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaaacattaacattgtttaattg-ttgttgtttatgttgatgaattctct 22473064  T
Q  188 tacttaaattattgtttattagt 210  Q
    |||||||||||||||||||||||    
T  22473063 tacttaaattattgtttattagt 22473041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 31724256 - 31724465
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgatgatttggagttaattg 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||| ||||||| |||||||| | |  |  ||| |      
T  31724256 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgttatgtgatgttattaatgattaat--gtattactat 31724353  T
Q  115 atga-----tgtat------agttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtt 203  Q
    ||||     |||||      |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |    
T  31724354 atgaatatatgtattactatagttggaattatgtgaagcactaacattgtttaattgattgttgtttatgtcgataagttctcttacttaaattactg-t 31724452  T
Q  204 tattagtattgct 216  Q
    |||||||||||||    
T  31724453 tattagtattgct 31724465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 22258985 - 22259068
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||||||||||||||| ||||||||    
T  22258985 gatgaatatgatgttatatgaagatgaattcttatatgaatgtacctgttgataactatgatgttatatgatgttattaatgat 22259068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 23669840 - 23669761
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||| ||||    
T  23669840 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgttatatgatgttattaa 23669761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 12800589 - 12800506
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  12800589 gatgaatatgacgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 12800506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 36406687 - 36406768
Alignment:
Q  141 gcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||||||| |||||||||||| |||||| || |||||||||||||||||||||||||| || || ||||||    
T  36406687 gcattaacattgtttaattg-ttgttgtttatggtgataaattctcttacttaaattattgtttattagttttactaatgatg 36406768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 22473262 - 22473176
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || || ||| |||| ||  |||||||||||||||    
T  22473262 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagtatcaatattttttattt--ttgttgtttatgttg 22473176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 22343866 - 22343748
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgttta-tgttgataagttgtcttacttaaattattgttt 204  Q
    ||||||| |||||| |||||||||||||||||||||||||     || | | ||| |||||||||  ||||||||| || ||||||||||||||||||||    
T  22343866 agttaatggatgatttatagttggaattatgtgaagcattgttgatgatgatttg-ttgttgttttgtgttgataaattctcttacttaaattattgttt 22343768  T
Q  205 attagtattgctgatgatgt 224  Q
    |||||||||||| |||||||    
T  22343767 attagtattgctaatgatgt 22343748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 22355526 - 22355408
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgttta-tgttgataagttgtcttacttaaattattgttt 204  Q
    ||||||| |||||| |||||||||||||||||||||||||     || | | ||| |||||||||  ||||||||| || ||||||||||||||||||||    
T  22355526 agttaatggatgatttatagttggaattatgtgaagcattgttgatgatgatttg-ttgttgttttgtgttgataaattctcttacttaaattattgttt 22355428  T
Q  205 attagtattgctgatgatgt 224  Q
    |||||||||||| |||||||    
T  22355427 attagtattgctaatgatgt 22355408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 36406316 - 36406377
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaaca 149  Q
    ||||||||||||||||| | |||||||||||| ||||| |||||||||||||||||||||||    
T  36406316 ttgttaatgatgatttgaaattaattgatgatttatagatggaattatgtgaagcattaaca 36406377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 22482610 - 22482553
Alignment:
Q  166 tgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  22482610 tgtttgtgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 22482553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 20518430 - 20518481
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||| || |||||||||||||||||||||| ||||||||| ||||||    
T  20518430 tgttgataaattctcttacttaaattattgtttataagtattgctaatgatg 20518481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 36728918 - 36729001
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||| |||||||||||||||||||||||||| || |||| |||| |||  ||| |||  |||||| ||| ||||||||    
T  36728918 gatgaatatgttgttatatgaagttgaattcttatataaatgtacttgttgatagctatgatgcgatatgaagttattaatgat 36729001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 5079744 - 5079691
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatga 221  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||    
T  5079744 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatga 5079691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 22480416 - 22480453
Alignment:
Q  185 tcttacttaaattattgtttattagtattgctgatgat 222  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  22480416 tcttacttaaattattgtttattaggattgttgatgat 22480453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 22473341 - 22473276
Alignment:
Q  109 taattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||| ||||| ||||||||||||||||||||| || || ||| |||| ||  |||||||||||||||    
T  22473341 taattaatgatttatagttggaattatgtgaagtatcaatattttttattt--ttgttgtttatgttg 22473276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 13134274 - 13134409
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  13134274 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcattaacattgttttattgattgttgtttatgttgataagttctct 13134373  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| |||||||||||| |||| ||||||    
T  13134374 tacttaaattactgtttattagtaatgctaatgatg 13134409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 15577277 - 15577411
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||  |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  15577277 ttgttaatgatgatttaaagttaattgatgatttatagttgaaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 15577375  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||| || || ||||||    
T  15577376 tacttaaattattgtttattagttttactaatgatg 15577411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 20253964 - 20254096
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||| ||||||||||| |||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||||| ||||| || |||    
T  20253964 ttgttgatgatgatttgaagttgattgatgatttatagtttgaattatgtgaggcattaacattgtttaattg-ttgttgtttatgtagataaattttct 20254062  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
     ||||| ||  |||||||||||| || || ||||||    
T  20254063 cacttagat--ttgtttattagttttactaatgatg 20254096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 13134045 - 13134128
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| ||||||| ||||||| ||||||||    
T  13134045 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacatgttgataactatgatgttatgtgatgttattaatgat 13134128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 14161555 - 14161638
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||| |||||| | ||||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||| ||||||||    
T  14161555 gatgaatatgaggttatacgtagttgaattcttatatgaatgtagctgttgataactatgatgttatatgatgttattaatgat 14161638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 18875542 - 18875622
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||  || ||||||||||||||| ||||||||    
T  18875542 atgaatatgatgatatatgaagttgatttcttatatgaatgtacctgttgataa--atgatgttatatgatgttattaatgat 18875622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3287353 - 3287271
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||||||||| |||||||||||| |||| |||| |||| ||| || |||||||||||| ||||||||    
T  3287353 atgaatatgatgatatatgaagttgatttcttatatgaatgtacttgttgataactatgattttatatgatgttattaatgat 3287271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 43277440 - 43277522
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||| ||||| |||||||||||| |||| |||| |||| ||| ||||||||||||||| ||||||||    
T  43277440 atgaatatgatgatatatgatgttgatttcttatatgaatgtacatgttgataactatgatgttatatgatgttattaatgat 43277522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 8514427 - 8514493
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    |||| ||||||||||||||||||| ||||||||||||||| |||||| || |||| ||| |||||||    
T  8514427 gatgtatatgatgttatatgaagtggaattcttatatgaatgtacctcttgataactatgatgttat 8514493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 9255842 - 9255785
Alignment:
Q  166 tgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  9255842 tgtttgtgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 9255785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 9314408 - 9314465
Alignment:
Q  166 tgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  9314408 tgtttgtgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 9314465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 11314300 - 11314339
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  11314300 agttaattgatgatttatagttggaattatgtgaagcatt 11314339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 11314493 - 11314548
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  11314493 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 11314548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 15105378 - 15105423
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||    
T  15105378 aattatatgaagcattaacattgtttaattg-ttgttgtttatgttg 15105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 24271104 - 24271149
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  24271104 aattatgtgaagcattaacattgtttaatt-tttgttgtttatgttg 24271149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 9744470 - 9744519
Alignment:
Q  92 taatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  9744470 taatgatgatttgaagttaaatgatgatttatagttggaactatgtgaag 9744519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 33059397 - 33059358
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||||| | |||||||||||||||||||||||    
T  33059397 agttaattgatgatttgtagttggaattatgtgaagcatt 33059358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 9255768 - 9255718
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagtattgctgatgat 222  Q
    ||||||||| || ||||||||||||||||||||||||  |||| |||||||    
T  9255768 tgttgataaattttcttacttaaattattgtttattatgattgttgatgat 9255718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 9314482 - 9314532
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagtattgctgatgat 222  Q
    ||||||||| || ||||||||||||||||||||||||  |||| |||||||    
T  9314482 tgttgataaattttcttacttaaattattgtttattatgattgttgatgat 9314532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 9744379 - 9744459
Alignment:
Q  92 taatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgt 174  Q
    ||||||||||||| |||| ||| ||||| ||||||||||| ||||||||| || || ||| ||| |||| |||||||||||||    
T  9744379 taatgatgatttgaagttgattaatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgt 9744459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 9744595 - 9744633
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagt 210  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  9744595 tgttgataaattctcttacttaaattattgtttattagt 9744633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 48217952 - 48218001
Alignment:
Q  162 ttgttgtt-tatgttgataagttgtcttacttaaattattgtttattagt 210  Q
    |||||||| ||||||||||| || |||| |||||||||||||||||||||    
T  48217952 ttgttgttctatgttgataaattctcttccttaaattattgtttattagt 48218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 188271 - 188407
Alignment:
Q  88 ttgttaatgatgatttggag-ttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtc 186  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  188271 ttgttaatgatgatttgaagattaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagctctc 188370  T
Q  187 ttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  188371 ttacttaaattactgtttattagtattgctaatgatg 188407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 188043 - 188126
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  188043 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 188126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 3e-53; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 10744577 - 10744698
Alignment:
Q  87 gttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtc 186  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10744577 gttgttaatgatgatttgaagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctc 10744676  T
Q  187 ttacttaaattattgtttatta 208  Q
    |||||||||| | |||||||||    
T  10744677 ttacttaaatgactgtttatta 10744698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 25138691 - 25138586
Alignment:
Q  118 atgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctg 217  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||     
T  25138691 atgtatagttggaattatgtgaagcactaacattgtttaattgattgttgtttatctcgataagttctcttacttaaattactgtttattagtattgcta 25138592  T
Q  218 atgatg 223  Q
    ||||||    
T  25138591 atgatg 25138586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 25140303 - 25140220
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  25140303 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttaataactatgatgttatgtgatgttattaatgat 25140220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 10744377 - 10744460
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||| |||| ||| |||| ||||| |||| ||||||||    
T  10744377 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacatgttgataactatgatgtgatatgttgttattaatgat 10744460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 22690051 - 22689972
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||  || ||||||||||||||| ||||    
T  22690051 gatgaatatcatgttatatgaagttgaattcttatatgaatgtacctgttgataacaatgatgttatatgatgttattaa 22689972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 22694647 - 22694568
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||  || ||||||||||||||| ||||    
T  22694647 gatgaatatcatgttatatgaagttgaattcttatatgaatgtacctgttgataacaatgatgttatatgatgttattaa 22694568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 20915475 - 20915396
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    |||| ||||||||||||||||| |||||||| |||||||| ||||||||| |||| ||| ||||||||||||||| ||||    
T  20915475 gatgtatatgatgttatatgaatttgaattcctatatgaatgtacctgttgataactatgatgttatatgatgttattaa 20915396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 28345772 - 28345855
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||  | || || | ||| |||||||||||||||||| |||||    
T  28345772 gatgaatatgatgttatatgatgttgaattgttatatgaatgtatatattgatgaatatgatgttatatgatgttgttcatgat 28345855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 1385137 - 1385188
Alignment:
Q  90 gttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||| ||||||||||| || ||||||||||| |||||||||    
T  1385137 gttaatgatgatttgaagttaattgataatttatagttggaactatgtgaag 1385188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 14184902 - 14184941
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  14184902 agttaattgatgatttatagttggaattatgtgaagcatt 14184941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 22685498 - 22685443
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  22685498 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 22685443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 28345956 - 28346039
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||| ||||||| |||||||| ||||| ||| |||  |||| || | ||| |||||||||||||||||| |||||    
T  28345956 gatgaatatgatggtatatgatgttgaattattataggaatgtatatgttgatgaatatgatgttatatgatgttgttcatgat 28346039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 36733161 - 36733216
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  36733161 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 36733216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 45679207 - 45679152
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  45679207 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 45679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 25140075 - 25140040
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtat 123  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25140075 ttgttaatgatgatttgaagttaattgatgatgtat 25140040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 25587513 - 25587552
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  25587513 gatgaatatgatgttatatgatgttgaattattatatgaa 25587552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 44761880 - 44761825
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  |||||||||||||||||||||| || ||||||    
T  44761880 tttatgttgataaattctcttatctaaattattgtttattagtattactaatgatg 44761825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 21317031 - 21317084
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||| ||||||||||| |||| ||||||||| |||| |||||| |||||||||    
T  21317031 ttgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaag 21317084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 21337021 - 21337074
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||| ||||||||||| |||| ||||||||| |||| |||||| |||||||||    
T  21337021 ttgttgatgatgatttgaagttgattgatgatttataattggaactatgtgaag 21337074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 17906 - 17772
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  17906 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 17808  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| ||||||||||| || || ||||||    
T  17807 tacttaaattagtgtttattagttttactaatgatg 17772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 33596 - 33461
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| | |||||| |||    
T  33596 ttgttaatgatgatttgaagttaaatgatgatgtatagttggaattatgtgaaacactaacattgtttaattgattgttgtttatgtcggtaagttctct 33497  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| | ||||||||||||||| ||||||    
T  33496 tacttaaattactctttattagtattgctaatgatg 33461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 33814 - 33775
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  33814 gatgaatatgtcgttatatgaagttgaattcttatatgaa 33775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 14027166 - 14027297
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||| || |||    
T  14027166 ttgttaatgatgatttgaagttaattgatgatttatagttggaattatgtgaagcattaacattgttta----attgttgtttatgttgataaattctct 14027261  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||| || || ||||||    
T  14027262 tacttaaattattgtttattagttttactaatgatg 14027297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 12354904 - 12354770
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    |||||| |||||||||| |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |||    
T  12354904 ttgttattgatgatttgaagttgattgatgatttatagttggaattatgtgaaacattaacattgtttaattg-ttgttgtttatgttgataaattttct 12354806  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||||||| || || ||||||    
T  12354805 tacttaaattattgtttattagttttactaatgatg 12354770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 8834471 - 8834605
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||| || |||    
T  8834471 ttgttaatgatgatttgaagttaattgatgatgtatagttggaattttttgaagcattaacattatttaattg-ttgttgtttatgtttataaattctct 8834569  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||||||||||| |||||| || || ||||||    
T  8834570 tacttaaattattgttaattagttttactaatgatg 8834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 8505023 - 8505140
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||| | ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||| || |||    
T  8505023 ttgttaatgatgattcgaagttaattgatgatgtatagttgaaactatgtgaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 8505121  T
Q  188 tacttaaattattgtttat 206  Q
    ||||||| ||| |||||||    
T  8505122 tacttaagttagtgtttat 8505140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 23200188 - 23200254
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||    
T  23200188 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgttat 23200254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 16605599 - 16605644
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  16605599 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttg 16605644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 22110569 - 22110524
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22110569 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttg 22110524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 6551807 - 6551858
Alignment:
Q  90 gttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  6551807 gttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaag 6551858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 6551933 - 6551984
Alignment:
Q  90 gttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  6551933 gttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaag 6551984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 26646422 - 26646370
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaa 140  Q
    ||||| ||||||||||| |||| ||||||||| ||||||||||| ||||||||    
T  26646422 ttgttgatgatgatttgaagttgattgatgatttatagttggaactatgtgaa 26646370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 21402092 - 21402131
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  21402092 agttaaatgatgatttatagttggaattatgtgaagcatt 21402131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 21402234 - 21402272
Alignment:
Q  185 tcttacttaaattattgtttattagtattgctgatgatg 223  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  21402234 tcttacttgaattattgtttattagtattgctaatgatg 21402272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 25324 - 25190
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtct 187  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| || |||    
T  25324 ttgttaatgatgatttgaagttaattaatgatgtatagttggaattatgtaaagcattaacattgtttaattg-ttgttgtttatgttgataaattctct 25226  T
Q  188 tacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||| ||| ||||||||||| || || ||||||    
T  25225 tacttaagttactgtttattagttttactaatgatg 25190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 870 - 979
Alignment:
Q  114 gatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtatt 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||    
T  870 gatgatgtatagttggaattatgtgaaacattaacattgtttaattgattgttgtttatgttgataagttctcttacttaaattactatttatttgtatt 969  T
Q  214 gctgatgatg 223  Q
    ||| ||||||    
T  970 gctaatgatg 979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 612 - 694
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||| ||||||| ||||||||    
T  612 atgaatatgatgttatatgaagttgaattattatatgaatgtacctgttaataactatgatgttatgtgatgttattaatgat 694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 3184 - 3053
Alignment:
Q  91 ttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttac 190  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||    
T  3184 ttaatgatgattcgaagttaattgatgatgtatagttggaattatgtgaagtattaacattgtttaatt-attgttgtttatgttgataaattctcttac 3086  T
Q  191 ttaaattattgtttattagtattgctgatgatg 223  Q
    |||| | | ||||||||||| || || ||||||    
T  3085 ttaattgactgtttattagttttactaatgatg 3053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 19006 - 18893
Alignment:
Q  109 taattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttatta 208  Q
    ||||| ||||| ||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||    
T  19006 taattaatgatttatagttggaattatgtgaagtatcaatattgtttaattg-ttgttgtttatgttgataaattctcttacttaaattattgtttatta 18908  T
Q  209 gtattgctgatgatg 223  Q
    || || || ||||||    
T  18907 gttttactaatgatg 18893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 3584 - 3471
Alignment:
Q  109 taattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttatta 208  Q
    ||||| ||||| ||| ||||||||||| | ||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||    
T  3584 taattaatgatttattgttggaattatttaaagcattaacattgtttaatt-attgttgtttatgctgataaattctcttacttaaattattgtttatta 3486  T
Q  209 gtattgctgatgatg 223  Q
    || || || ||||||    
T  3485 gttttactaatgatg 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1186 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 189 - 106
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  189 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 66396 - 66479
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  66396 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 66479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 66623 - 66677
Alignment:
Q  86 tgttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaa 140  Q
    |||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  66623 tgttgttaataatgatttgaagttaattgatgatgcatagttggaattatgtgaa 66677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 40320 - 40237
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||| ||||||||||||||| ||||||||    
T  40320 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctattgataactatgatgttatatgatgttattaatgat 40237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 39647 - 39565
Alignment:
Q  92 taatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||| |||| ||||||||| ||||||||||| ||||||||| || || ||| ||| |||| |||||||||||||||    
T  39647 taatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgttg 39565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 39551 - 39498
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||| ||| |||||    
T  39551 ttgttaatgaagatttgaagttgattgatgatttatagttggaactatatgaag 39498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 39423 - 39387
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttatta 208  Q
    ||||||||| || ||||||||||||||||||||||||    
T  39423 tgttgataaattctcttacttaaattattgtttatta 39387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 24751 - 24830
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| |||||||| |||||| ||||    
T  24751 gatgaatatgatgttatatgaagttgaattcttatatgaatgtacctgttgataactatgatgttatacgatgttattaa 24830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 20411416 - 20411495
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| ||| ||||||||||||||| ||||    
T  20411416 gatgaatatgatgttatattaagttgaattcttatatgaatgtacctgttgataactatgatgttatatgatgttattaa 20411495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 18400992 - 18400883
Alignment:
Q  113 tgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttgtcttacttaaattattgtttattagtat 212  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||| ||| || ||||||||||||||| || ||||||| |    
T  18400992 tgatgatttatagttcgaattatgtgaaacattaacattgtttaattg-ttgttatttatgttggtaaattctcttacttaaattatcgtctattagttt 18400894  T
Q  213 tgctgatgatg 223  Q
    | || ||||||    
T  18400893 tactaatgatg 18400883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 18928056 - 18927973
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| |||| |||  ||| ||||||||||||||| ||||||||    
T  18928056 gatgaatatgatgctatatgaagttgaattcttatatgaatgtacatgttgatagctatgatgttatatgatgtttttaatgat 18927973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 19234159 - 19234114
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  19234159 aattatgtgaagcattaacattgtttaattg-ttgttgtttatgttg 19234114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 23492835 - 23492888
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  23492835 ttgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaag 23492888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 23498433 - 23498486
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  23498433 ttgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaag 23498486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 19958225 - 19958311
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||| |||| ||||||||| |||| |||||| ||||||||| || || ||| ||| |||| |||||||||||||||    
T  19958225 ttgttaatgatgatttgaagttgattgatgatttatatttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgttg 19958311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 13284898 - 13284823
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttg 90  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||  | || || | ||| ||||||||||||||||    
T  13284898 gatgaatatgatgttatatgatgttgaattattatatgaatgtatattttgatgaatatgatgttatatgatgttg 13284823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 18458407 - 18458446
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  18458407 gatgaatatgatgttatatgaagttgaattattatatgaa 18458446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 29044038 - 29043983
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  29044038 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 29043983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 25917471 - 25917426
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||    
T  25917471 aattatgtgaagcatgaacattgtttaattg-ttgttgtttatgttg 25917426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 22555927 - 22555874
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||| |||||| || ||||||||||| |||||||||    
T  22555927 ttgttaatgatgatttgaagttgattgattatttatagttggaactatgtgaag 22555874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 23492733 - 23492785
Alignment:
Q  89 tgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    |||||||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  23492733 tgttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaag 23492785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 23498331 - 23498383
Alignment:
Q  89 tgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    |||||||||||||||| |||| ||||||||| || |||||||| |||||||||    
T  23498331 tgttaatgatgatttgaagttgattgatgatttagagttggaactatgtgaag 23498383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 30674644 - 30674682
Alignment:
Q  137 tgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  30674644 tgaagcattaacattgtttaattg-ttgttgtttatgttg 30674682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 31347081 - 31347135
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgat 222  Q
    ||||||||| ||| || |||||||||| | ||||||||||||||||| |||||||    
T  31347081 tttatgttgttaaattctcttacttaactcattgtttattagtattgttgatgat 31347135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 626 - 709
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    ||||||||||||||||||||||||||| | |||||||||| ||||||||| |||| ||| |||| |||||||||| ||||||||    
T  626 gatgaatatgatgttatatgaagttgattacttatatgaatgtacctgttgataactatgatgtgatatgatgttattaatgat 709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 1036 - 954
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaatgat 98  Q
    |||||||||||| ||||||||||| |||||||||||||| |||| |||| |||| ||| ||||||||||||||| || |||||    
T  1036 atgaatatgatgctatatgaagttaaattcttatatgaatgtacatgttgataactatgatgttatatgatgttattgatgat 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 599 - 685
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||| ||| ||| |||| |||||||||||||||    
T  599 ttgttaatgatgatttgaagttgattgatgatttatagttggaactatgtgaagtattaatattattt-attg-ttgttgtttatgttg 685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 699 - 751
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaa 140  Q
    |||||||| |||||||| |||| ||||||||| ||||||||||||||||||||    
T  699 ttgttaattatgatttgaagttgattgatgatttatagttggaattatgtgaa 751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 823 - 865
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagt 210  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  823 tttatgttgataaattctcttacttaaattattgtttattagt 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 13 - 90
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtt 92  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||  |||| || | ||| ||| | ||||||||||||    
T  13 gatgaatatgatgttatatgatgttgaattattatatgaatgtatatgttgatgaatatgatgatttatgatgttgtt 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 46701 - 46779
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgttaa 94  Q
    ||||||||| |||||||||||||||||||||||||||||| |||| |||| |||| ||| || |||||||||||| ||||    
T  46701 gatgaatatcatgttatatgaagttgaattcttatatgaatgtacatgttgataactatgat-ttatatgatgttattaa 46779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 24370 - 24309
Alignment:
Q  162 ttgttgtttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  24370 ttgttgtttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 24309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 24488 - 24449
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  24488 agttaattgatgatttatagttggaattatgtgaagcatt 24449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 947 - 882
Alignment:
Q  16 atgaatatgatgttatatgaagttgaattcttatatgaacgtacctgttaataattataatgttat 81  Q
    |||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||| |||||||    
T  947 atgaatatgaggttatatgaagttaaattcttatatgaatgtacctgttgataactatgatgttat 882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 61499 - 61446
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  61499 ttgttaatgatgatttgaagttaattgatgatttatagttggaactatgtgaag 61446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 7648 - 7609
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  7648 gatgaatatgatgttatatgaagttgaattattatatgaa 7609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 7560 - 7507
Alignment:
Q  40 gaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtta 93  Q
    ||||||||||||||| ||| || || |||| ||| |||||||||||||||||||    
T  7560 gaattcttatatgaatgtatctattgataactatgatgttatatgatgttgtta 7507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 461 - 500
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  461 gatgaatatgatgttatatgaagttgaattattatatgaa 500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 549 - 602
Alignment:
Q  40 gaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtta 93  Q
    ||||||||||||||| ||| ||||| |||| ||| |||||||||||||||||||    
T  549 gaattcttatatgaatgtatctgttgataactatgatgttatatgatgttgtta 602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 14814 - 14759
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  14814 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 14759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 55764 - 55725
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  55764 gatgaatatgatgttatatgaagttgaattattatatgaa 55725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 6012 - 6092
Alignment:
Q  94 atgatgatttggagttaattgatgatgtatagttggaattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||| |||| ||||||||| ||||||||||| ||||||||| || || ||| ||| |||| |||||||||||||||    
T  6012 atgatgatttgaagttgattgatgatttatagttggaactatgtgaagtatcaatattattt-attg-ttgttgtttatgttg 6092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 6134 - 6172
Alignment:
Q  172 tgttgataagttgtcttacttaaattattgtttattagt 210  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  6134 tgttgataaattctcttacttaaattattgtttattagt 6172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 48889 - 48844
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  48889 aattatgtgaaacattaacattgtttaattg-ttgttgtttatgttg 48844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 4282 - 4335
Alignment:
Q  39 tgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtt 92  Q
    |||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||||    
T  4282 tgaattcttatatgaatgtatctgttgataaatatgatgttatatgatgttgtt 4335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 8842 - 8895
Alignment:
Q  39 tgaattcttatatgaacgtacctgttaataattataatgttatatgatgttgtt 92  Q
    |||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||||    
T  8842 tgaattcttatatgaatgtatctgttgataaatatgatgttatatgatgttgtt 8895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 19148 - 19201
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||    
T  19148 ttgttaatgatgatttgaagttgattgatgatttatagttggaactaagtgaag 19201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 19263 - 19318
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| |  |||||  ||||||||||||||||||||||||| ||||||    
T  19263 tttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatg 19318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 64843 - 64790
Alignment:
Q  170 tatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||| || |||||  ||||||||||||||||||||||||| ||||||    
T  64843 tatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 64790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 67518 - 67571
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatga 221  Q
    ||||||||||||| || |||||  ||||||||||||||||||||||||| ||||    
T  67518 tttatgttgataaattctcttatctaaattattgtttattagtattgctaatga 67571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 60802 - 60842
Alignment:
Q  106 agttaattgatgatgtatagttggaattatgtgaagcatta 146  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  60802 agttaattgatgatttgtagttggaattatgtgaagcatta 60842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 5386 - 5425
Alignment:
Q  15 gatgaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  5386 gatgaatatgatgctatatgaagttgaattcgtatatgaa 5425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 15170 - 15115
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattattgtttattagtattgctgatgatg 223  Q
    ||||||||||||| || ||||||||||||||||||| |||||| || || ||||||    
T  15170 tttatgttgataaattctcttacttaaattattgttcattagttttactaatgatg 15115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 14393 - 14363
Alignment:
Q  121 tatagttggaattatgtgaagcattaacatt 151  Q
    |||||||||||||||||||||||||||||||    
T  14393 tatagttggaattatgtgaagcattaacatt 14363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 18558 - 18517
Alignment:
Q  134 atgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  18558 atgtgaagcatcaacattgtttaattg-ttgttgtttatgttg 18517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 10455 - 10500
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||| | |||||||||||||||||||||| |||||||||||||||    
T  10455 aattatataaagcattaacattgtttaattg-ttgttgtttatgttg 10500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 27918 - 27963
Alignment:
Q  130 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||| | |||||||||||||||||||||| |||||||||||||||    
T  27918 aattatattaagcattaacattgtttaattg-ttgttgtttatgttg 27963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Original strand, 8484 - 8521
Alignment:
Q  108 ttaattgatgatgtatagttggaattatgtgaagcatt 145  Q
    |||||||||||| | |||||||||||||||||||||||    
T  8484 ttaattgatgatttgtagttggaattatgtgaagcatt 8521  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 1585 - 1549
Alignment:
Q  139 aagcattaacattgtttaattgattgttgtttatgttg 176  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1585 aagcattaacattgtttaattg-ttgttgtttatgttg 1549  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 8239 - 8292
Alignment:
Q  88 ttgttaatgatgatttggagttaattgatgatgtatagttggaattatgtgaag 141  Q
    ||||||||||||||||| |||| ||||||||| ||| ||| ||| |||||||||    
T  8239 ttgttaatgatgatttgaagttgattgatgatttattgtttgaactatgtgaag 8292  T

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Target: scaffold0379 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 9314 - 9258
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattatt-gtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||| |||||||||||||||| ||||||    
T  9314 tttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatg 9258  T

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Target: scaffold0379; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 16506 - 16450
Alignment:
Q  168 tttatgttgataagttgtcttacttaaattatt-gtttattagtattgctgatgatg 223  Q
    ||||||||||||| || |||||  ||||||||| |||||||||||||||| ||||||    
T  16506 tttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatg 16450  T

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Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 62674 - 62710
Alignment:
Q  18 gaatatgatgttatatgaagttgaattcttatatgaa 54  Q
    |||||||||||||||||| |||||||| |||||||||    
T  62674 gaatatgatgttatatgatgttgaattattatatgaa 62710  T

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