View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16217_low_6 (Length: 613)
Name: NF16217_low_6
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 95 - 461
Target Start/End: Complemental strand, 26145252 - 26144894
Alignment:
| Q |
95 |
ttcttcaatattggtgttacgctgattcgagtagaactaaactgaagtacaaaattgatgaataatcnnnnnnnnnnaagatgaagaataattcttgtaa |
194 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||||||||||||||||| |
|
|
| T |
26145252 |
ttctttaatattaatgttacgctgattcgagtagaactaaactgaaccacaaaattgaagaatatt--tttttttttaagatgaagaataattcttgtaa |
26145155 |
T |
|
| Q |
195 |
aaaaccttcctaattgtaaatacaaaaattatttcaatacacgagaaaaattgaaaatattgaaagaagcttcttgtgagattattatgtggcccctctt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26145154 |
aaaaccttcctaattgtaaatacaaaaactatttcaatacacgagaaaaattgaaaatattgaaagaagcttcttgtgagattattatgtggcccctcct |
26145055 |
T |
|
| Q |
295 |
ccaattttagtttgtgtaaagtacaaagacaaaataaatagaaaaagaggtggtannnnnnncgtcggtttatgccgtgtaatggaagttataaattgac |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26145054 |
ccaattttagtttgtgtaaagtacaaagacaaaataaatagaaaaagaagtggta---ttttcgtcggtttatgccgtgtaacggaagttataaattgac |
26144958 |
T |
|
| Q |
395 |
tagagatacccaaaactaaatcgttactaaaccaaccaacgaacgagtgaaaaaag-aactctgattc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
26144957 |
tagagatacccaaaactaaatcgttactaaaccaacc----aacgagtgaaaaaagcaactctgattc |
26144894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 26145787 - 26145675
Alignment:
| Q |
22 |
agaataattgaacaaactcaaaa-tatgaaatcctcattgccattctttacaaattaaaaaa-taccataatggattcttcaatattggtgttacgctga |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26145787 |
agaataattgaacaaactcaaaagtatgaaatcctcattgccattctctacaaattaaaaaaataccataatggattcttgaatattggtgttacgctga |
26145688 |
T |
|
| Q |
120 |
ttcgagtagaact |
132 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
26145687 |
tccgagtagaact |
26145675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 539 - 605
Target Start/End: Complemental strand, 26144817 - 26144751
Alignment:
| Q |
539 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctgttcatctc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26144817 |
aaaagccacgttatgcatagaggaataagccaccacaccataacacacccatctctctgttcttctc |
26144751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 26145563 - 26145511
Alignment:
| Q |
94 |
attcttcaatattggtgttacgctgattcgagtagaactaaactgaagtacaa |
146 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
26145563 |
attcttcaatattggtgttacgctgatccgagtagaactaaactgaaatacaa |
26145511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Original strand, 26145259 - 26145304
Alignment:
| Q |
89 |
aatggattcttcaatattggtgttacgctgattcgagtagaactaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26145259 |
aatggattcttcaatattggtgttacgctgatccgagtagaactaa |
26145304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 26145411 - 26145462
Alignment:
| Q |
86 |
cataatggattcttcaatattggtgttacgctgattcgagtagaactaaact |
137 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| |||||| ||||||||| |
|
|
| T |
26145411 |
cataatggattcttcaatattggtgtgacgttgatccgagtaaaactaaact |
26145462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 26145407 - 26145356
Alignment:
| Q |
95 |
ttcttcaatattggtgttacgctgattcgagtagaactaaactgaagtacaa |
146 |
Q |
| |
|
|||||||||||||||| ||| || ||||||||| |||||||||||| ||||| |
|
|
| T |
26145407 |
ttcttcaatattggtgctacactaattcgagtataactaaactgaactacaa |
26145356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University