View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16217_low_7 (Length: 552)
Name: NF16217_low_7
Description: NF16217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16217_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 489; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 39584318 - 39583777
Alignment:
| Q |
1 |
ccataggaggttataatgtcccaaaaaacactattttattggttaatgcttgggcaattcacagagattctcaactatggagtgacccaacacaattcaa |
100 |
Q |
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| T |
39584318 |
ccataggaggttatattgtcccaaaaaacactattttattggttaatgcttgggcaattcacagagattctcaactatggagtgacccaacacaattcaa |
39584219 |
T |
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| Q |
101 |
gccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaacgtacagtt |
200 |
Q |
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| T |
39584218 |
gccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggagcaaacttagggcaacgtacagtt |
39584119 |
T |
|
| Q |
201 |
agtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagt |
300 |
Q |
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| T |
39584118 |
agtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagc |
39584019 |
T |
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| Q |
301 |
taattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaagaaattctgttgcc |
400 |
Q |
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| T |
39584018 |
taattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagagaaggaaattctgttgcc |
39583919 |
T |
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| Q |
401 |
gatgagcttgctgagaatggtcatagtctccctcaactttactctcaacggtgggatttcac-nnnnnnnagttcctttgttagatacagatagcagtag |
499 |
Q |
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| T |
39583918 |
gatgagcttgctgagaatggtcatagtctccctcaactttactctcaatggtgggatttcacttttttttagttcctttgttagatacagatagcagtag |
39583819 |
T |
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| Q |
500 |
cttaccttacttgagacgatcctttgtataatcttggttcat |
541 |
Q |
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| T |
39583818 |
cttaccttacttgagacgatcctttgtataatcttggttcat |
39583777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 228 - 377
Target Start/End: Complemental strand, 39572713 - 39572566
Alignment:
| Q |
228 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaag |
327 |
Q |
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||||| |||||||||| ||||| |||| ||||||||||| || | |||||||||||| ||||||||| ||| ||||||||| ||||||||||||| || |
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| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattgat--gagttaaggaaaaggagtcactactccaaagccaattcccttagaggccatgtgtatag |
39572616 |
T |
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| Q |
328 |
ctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatg |
377 |
Q |
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| T |
39572615 |
ctcgctcaaatgtcatcaacaaggtttttctaaaagccggtgaaaacatg |
39572566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 176
Target Start/End: Complemental strand, 12151563 - 12151489
Alignment:
| Q |
102 |
ccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
176 |
Q |
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| T |
12151563 |
ccagagagatttgaaaaagaaggtgaggtaaataagttaattgcatttggttttggaagaagggcttgtcctgga |
12151489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 177
Target Start/End: Complemental strand, 38974843 - 38974762
Alignment:
| Q |
96 |
ttcaagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctggag |
177 |
Q |
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| T |
38974843 |
ttcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccaggag |
38974762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 38931689 - 38931612
Alignment:
| Q |
99 |
aagccagagagatttgacaaagaaggagaagctgataagttgattccatttggattgggaagaagggcttgtcctgga |
176 |
Q |
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||||||||||||||||| |||||||| ||||| | ||||| ||| ||||||| || ||||| |||| ||| |||||| |
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| T |
38931689 |
aagccagagagatttgaaaaagaaggggaagcaaacaagttaattgcatttggttttggaaggaggggttgccctgga |
38931612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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