View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_1 (Length: 587)
Name: NF16218_high_1
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 41250117 - 41249560
Alignment:
| Q |
1 |
gttagttagttagttctgaagagaagaaattaaagacattggaaagacatgatcaaatgttttgtattatttgagatgaattttatgagactggtattta |
100 |
Q |
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| T |
41250117 |
gttagttagttagttctgaagagaagaaattaaagacat-ggaaagacatgatcaaatgttttg---------agatgaattttatgagactggtattta |
41250028 |
T |
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| Q |
101 |
tttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgag |
200 |
Q |
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| T |
41250027 |
tttattctgccactggtagttatcagcacagatttggtactttattttcagctggctggatgtgatattgtgatgattgatgtcccacaaaaattatgag |
41249928 |
T |
|
| Q |
201 |
tacattttcaaattttgatgagtttaaagatgaatcgatacaggggtgatttgtaatgtagtgatcctatgatgttttgcatagcatgaaatatacatta |
300 |
Q |
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| T |
41249927 |
tatattttcaaattttgatgagtttaaagatgaatcgatacaggggggatttgtaatgtagtgatcctctgatgttttgcatagcatgaaatatacatta |
41249828 |
T |
|
| Q |
301 |
ttcaactggttttttatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaatttgtacgtc |
400 |
Q |
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| T |
41249827 |
ttcaactggttttatatatgcacacacaaaaagctacggttgcaatttctttaaaatataccgtcttgtctttttgttgagtaaatgtaatttgtacgtc |
41249728 |
T |
|
| Q |
401 |
ttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtgtataggtacatatataca |
500 |
Q |
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| T |
41249727 |
ttcgccatattgacatgttttactgagtaatagaccgtccattatttcatcaaaagatagagaacagagcaaatttacagtg--taggtacatatataca |
41249630 |
T |
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| Q |
501 |
agaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgatt |
570 |
Q |
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| T |
41249629 |
agaaaaggaatacaaccacgttgcaagtaccaattatatccaagcaagatatccatgtaatgtactgatt |
41249560 |
T |
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