View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_10 (Length: 362)
Name: NF16218_high_10
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 145 - 338
Target Start/End: Original strand, 26959619 - 26959812
Alignment:
| Q |
145 |
gagtaagaaaaatttacaggccaaattctatctgttccagaaccataacggttagagtttgatgatgatgataacaaggagaaagattgtttttggttat |
244 |
Q |
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| T |
26959619 |
gagtaagaaaaatttacaggccaaattctatctgttccagaaccataacggttagagtttgatgatgatgataacaaggagaaagatggtttttggttat |
26959718 |
T |
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| Q |
245 |
tatggatgagaaataacgcagagagaatagcaagacaggaacatgatactagataaactatgaagtttcttgtggacattgtcatggtgatgag |
338 |
Q |
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| T |
26959719 |
tatggatgagaaataacgcagagagaatagcaagacaggaacatgatactagataaactatgaagtttcttgtggacattgtcatggtgatgag |
26959812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26959474 - 26959546
Alignment:
| Q |
1 |
cggttccacatgctgatccnnnnnnnccaataactgtggccaaaacaagtttccaactaggttccaattcctg |
73 |
Q |
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| T |
26959474 |
cggttccacatgctgatccaaaaaaaccaataactgtggccaaaacaagtttccaactaggttccaattcctg |
26959546 |
T |
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