View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16218_high_17 (Length: 255)

Name: NF16218_high_17
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16218_high_17
NF16218_high_17
[»] chr5 (2 HSPs)
chr5 (109-255)||(15378497-15378643)
chr5 (10-67)||(15378685-15378742)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 109 - 255
Target Start/End: Complemental strand, 15378643 - 15378497
Alignment:
Q  109 gttttcatggaaactcaattttccatgtactccgcgacccaccaattaaattagatataaaattatggttaatttagttgagtatatggttaaacgtgtt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15378643 gttttcatggaaactcaattttccatgtactccgcgacccaccaattaaattagatataaaattatggttaatttagttgagtatatggttaaacgtgtt 15378544  T
Q  209 taaaattgtaaaattatagttaatcaagaagttgaattacttaaatt 255  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  15378543 taaaattgtaaaattatagttaatcaagaagttaaattagttaaatt 15378497  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 15378742 - 15378685
Alignment:
Q  10 ataattctggatacttatagaactagacgtaaataagtaagtacagtgaatcctgtcg 67  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  15378742 ataattctggatacttatagaacaagacgtaaataagtaagtacggtgaatcctgtcg 15378685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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