View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_18 (Length: 250)
Name: NF16218_high_18
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 44185095 - 44184882
Alignment:
| Q |
18 |
cccttaaaattaaaagattctttgatttgttaaaatctcataatatagagaacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataaca |
117 |
Q |
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| T |
44185095 |
cccttaaaattaaaagattctttgatttgttaaaat--------ataga-aacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataaca |
44185005 |
T |
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| Q |
118 |
atggaatagaacaaaaacagtagcggagcactggacaagtctcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagag |
217 |
Q |
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| T |
44185004 |
atggaatagaacaaaaacaatagcggagcactggacaagtctactgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagag |
44184905 |
T |
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| Q |
218 |
caaaagacaaagtaacccctatg |
240 |
Q |
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| T |
44184904 |
caaaagacaacgtaacccctatg |
44184882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 59 - 240
Target Start/End: Complemental strand, 10420893 - 10420712
Alignment:
| Q |
59 |
aatatagagaacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaatagaacaaaaacagtagcggagcactggacaagtc |
158 |
Q |
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| T |
10420893 |
aatatagaggacatgacagaacaataaaaattgtgcagtgtttgatccaaaagataacaatggaacagaacaaaaacagtaccggagcaccggacaagtc |
10420794 |
T |
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| Q |
159 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaaagacaaagtaacccctatg |
240 |
Q |
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| T |
10420793 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaaagacaacgtagcccctatg |
10420712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 35341621 - 35341802
Alignment:
| Q |
59 |
aatatagagaacagtacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaatagaacaaaaacagtagcggagcactggacaagtc |
158 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35341621 |
aatatagaggacaggacagaacaataaaagttgtgcggtgtttgatccaaaagataacaatggaacagaacaaaaacagtagcggagcactggacaagtc |
35341720 |
T |
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| Q |
159 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaaagacaaagtaacccctatg |
240 |
Q |
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| T |
35341721 |
tcccgaaatttgtaacccgcttaattggaggacaagtttttgtccgctggacaggagagcaaaagacaacgtaacccctatg |
35341802 |
T |
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