View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_2 (Length: 519)
Name: NF16218_high_2
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 43217196 - 43217522
Alignment:
| Q |
22 |
ccgccgacctcccaacgcgaatattggctttccgcaacaaaccctcaaaccctaaaaatactcttt---------ctcctcctcctcaatccaatccctc |
112 |
Q |
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| T |
43217196 |
ccgccaacctcccaacgcgaatattggctttccgcaacaaaccctcaaaccctaaaaatactctttctcctcctcctcctcctcctcaatccaatccctc |
43217295 |
T |
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| Q |
113 |
aaaatctagacacattcctcatgtaac-nnnnnnnatatgctcaataatatttttaggtttaaataagtatttagtctccggtaaaataaacactttttg |
211 |
Q |
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| T |
43217296 |
aaaatctagacacattcctcatgtaactcttttttatatgctcaataatattttta-gtttaaataagtatttagtctccggtaaaataaacaccttttg |
43217394 |
T |
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| Q |
212 |
ctttaagtccatat----nnnnnnnnnttgtttttcggtcgctacaaaaatttttcatgttgaaatcggtccatgtcgtagttgtaatattta-tttgtc |
306 |
Q |
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| T |
43217395 |
ctttaagtccctataaaaatattttttttgttttacggtcgctacaaaatttgttcgtgttgaaatcggtccatgtcgtagttgtaatatttattttgtc |
43217494 |
T |
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| Q |
307 |
cattctacataccataaggactaatttt |
334 |
Q |
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| T |
43217495 |
cattctacatacaataaggactaatttt |
43217522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 347 - 515
Target Start/End: Complemental strand, 43170640 - 43170472
Alignment:
| Q |
347 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
446 |
Q |
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| T |
43170640 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43170541 |
T |
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| Q |
447 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggttcctatgattctg |
515 |
Q |
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| T |
43170540 |
gtgtcctttccatagcactcaatgatatagttgttctttgtagtgattccgatggtttctatgattctg |
43170472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 347 - 515
Target Start/End: Original strand, 43217696 - 43217864
Alignment:
| Q |
347 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43217696 |
gtgtttgtgaaaatgattttgcagagttgtgagataactttgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactg |
43217795 |
T |
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| Q |
447 |
gtgtcctttccatagcactcaatgatacagttgttctttgtagtgattccgatggttcctatgattctg |
515 |
Q |
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| T |
43217796 |
gtgtcctttccatagcactcaatgatattgttgttctttgtagtgattccgatggtttctatgattctg |
43217864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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