View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_20 (Length: 242)
Name: NF16218_high_20
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 90 - 226
Target Start/End: Original strand, 44185269 - 44185409
Alignment:
| Q |
90 |
ttagtgtggagtattttaaaggaagttaaaagctcccaccgttccgtttggtttgcattgc----acagtcacaaagaaatcgcttcacgttccagaaag |
185 |
Q |
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| T |
44185269 |
ttagtgtggagtattttaaaggaagttaaaagctcccaccgttccgtttggtttgcattgcgcacacagtcacaaagaaatcgcttcacgttcgagaaag |
44185368 |
T |
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| Q |
186 |
aaatccatggctacaaaaagtgacaaggttagtaaccgtag |
226 |
Q |
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| T |
44185369 |
aaatccatggctacaaaaagtgacaaggttagtaaccgtag |
44185409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 4875859 - 4875945
Alignment:
| Q |
141 |
tttgcattgcacagt-cacaaagaaatcgcttcacgttccagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtag |
226 |
Q |
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| T |
4875859 |
tttgtattgcacagttcacagagaaatggcttcacgttcgagaaagaaatccatggctacaaaaagtgacaaggttagtaaccgtag |
4875945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 217
Target Start/End: Original strand, 1326315 - 1326344
Alignment:
| Q |
188 |
atccatggctacaaaaagtgacaaggttag |
217 |
Q |
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| T |
1326315 |
atccatggctacaaaaagtgacaaggttag |
1326344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 5387479 - 5387532
Alignment:
| Q |
168 |
gcttcacgttccagaaagaaatccatggctacaaaaagtgacaaggttagtaac |
221 |
Q |
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| T |
5387479 |
gcttcaccttcgagaaagaaatcaatggctacaaaaagtgacaaggttagtaac |
5387532 |
T |
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