View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16218_high_21 (Length: 240)
Name: NF16218_high_21
Description: NF16218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16218_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 49133372 - 49133591
Alignment:
| Q |
18 |
gttggattaatggtatgtcaacaatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagtttgaaaaaatacatt |
117 |
Q |
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| T |
49133372 |
gttggattaatggtatgtcaacaatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagtttgaaaaaatacatt |
49133471 |
T |
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| Q |
118 |
ttgattttgaaaaatcaaagtagctctctttgttta----tatttatttatttatatatcgtgctacaacatgacttgcaggactttcttcgggaaaaat |
213 |
Q |
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| T |
49133472 |
ttgattttgaaaaatcaaagtagctctctttgtttatatttatttatttatttatatatcgcgctacaacatgacttgcaggactttcttcgggaaaaat |
49133571 |
T |
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| Q |
214 |
tggtaccatagcctatgctt |
233 |
Q |
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| T |
49133572 |
tggtaccatagcctatgctt |
49133591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 6927079 - 6927164
Alignment:
| Q |
17 |
agttggattaatggtatgtcaacaatctgttggaattaatggtattggattttatacatcagagacattcgtagcagctggtaagt |
102 |
Q |
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| T |
6927079 |
agttggattaatggcatttcaacaatctgttggaattaatggcataggattctatacagctgagacttttgtagcagctggtaagt |
6927164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13883746 - 13883705
Alignment:
| Q |
18 |
gttggattaatggtatgtcaacaatctgttggaattaatggt |
59 |
Q |
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| T |
13883746 |
gttggattaatggtatgtgaacaatctgttggaattgatggt |
13883705 |
T |
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